B9I875_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0013s09120 T45641_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0013s09120.1 RRM 18 79

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.721
ppa009716m Prunus persica ppa009716m I 0.735
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.706
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.919
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.919
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.706
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.746
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.761
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.790
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.721
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.735
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.750
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.935
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.935
mgf017214m Mimulus guttatus mgf017214m I 0.721
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.871
ppa009564m Prunus persica ppa009564m I 0.935
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.855
MDP0000744398 Malus x domestica MDP0000744398 I 0.735
MDP0000548950 Malus x domestica MDP0000548950 I 0.735
MDP0000488395 Malus x domestica MDP0000488395 I 0.721
ppa016222m Prunus persica ppa016222m I 0.721
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.935
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.721
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.806
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.968
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.761
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.887
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.721
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.750
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.765
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.735
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.750
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.871
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.887
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.952
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.721
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.790
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.735
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.706
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.758
30170.m013735 Ricinus communis 30170.m013735 I 0.903
30076.m004440 Ricinus communis 30076.m004440 I 0.706
29983.m003293 Ricinus communis 29983.m003293 I 0.785
PK14266.1 Cannabis sativa PK14266.1 I 0.735
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.758
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.776
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.855
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.887
SB03G041530 Sorghum bicolor Sb03g041530 I 0.887
PK21213.1 Cannabis sativa PK21213.1 I 0.731
MDP0000181802 Malus x domestica MDP0000181802 N 0.919
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.790
BRADI2G61350 Brachypodium distachyon BRADI2G61350 N 0.726
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.790
mgf002440m Mimulus guttatus mgf002440m N 0.871
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.952
Glyma01g15840.1 Glycine max Glyma01g15840.1 N 0.806
SB03G046430 Sorghum bicolor Sb03g046430 N 0.774
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.935
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.774
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.823
MDP0000271231 Malus x domestica MDP0000271231 N 0.919