B9H5W4_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0005s27810 T45524_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.882
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s27810.1 RRM 34 101

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

117 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.971
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.971
mgf017214m Mimulus guttatus mgf017214m I 0.956
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.941
PK21213.1 Cannabis sativa PK21213.1 I 0.926
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.926
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.912
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.912
ppa009716m Prunus persica ppa009716m I 0.912
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.897
ppa009964m Prunus persica ppa009964m I 0.882
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.882
MDP0000184420 Malus x domestica MDP0000184420 I 0.868
MDP0000284454 Malus x domestica MDP0000284454 I 0.868
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.853
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.853
CU179634_3 Medicago truncatula CU179634_3 I 0.853
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.841
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.841
MDP0000744398 Malus x domestica MDP0000744398 I 0.838
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.838
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.838
MDP0000548950 Malus x domestica MDP0000548950 I 0.838
MDP0000138486 Malus x domestica MDP0000138486 I 0.838
MDP0000488395 Malus x domestica MDP0000488395 I 0.838
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.838
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.838
ppa016222m Prunus persica ppa016222m I 0.824
30076.m004440 Ricinus communis 30076.m004440 I 0.824
PK14266.1 Cannabis sativa PK14266.1 I 0.824
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.824
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.824
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.824
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.824
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.824
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.824
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.824
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.824
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.809
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.809
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.809
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.809
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.797
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.797
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.797
PK15672.1 Cannabis sativa PK15672.1 I 0.797
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.797
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.794
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.794
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.783
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.783
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.783
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.783
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.783
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.783
SB04G030020 Sorghum bicolor Sb04g030020 I 0.779
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.779
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.779
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.779
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.779
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.779
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.779
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.779
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.779
SB03G041530 Sorghum bicolor Sb03g041530 I 0.779
ppa018603m Prunus persica ppa018603m I 0.768
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.768
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.768
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.765
mgf002440m Mimulus guttatus mgf002440m N 0.765
29908.m006046 Ricinus communis 29908.m006046 I 0.765
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.765
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.765
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.765
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.765
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.765
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.765
MDP0000271231 Malus x domestica MDP0000271231 N 0.765
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.765
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.765
MDP0000134468 Malus x domestica MDP0000134468 I 0.765
MDP0000181802 Malus x domestica MDP0000181802 N 0.765
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.754
MDP0000118777 Malus x domestica MDP0000118777 I 0.754
ppa019392m Prunus persica ppa019392m I 0.754
MDP0000857317 Malus x domestica MDP0000857317 I 0.754
ppa018926m Prunus persica ppa018926m I 0.754
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.754
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.750
SB03G046430 Sorghum bicolor Sb03g046430 N 0.750
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.750
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.750
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.750
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.750
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.750
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.750
ppa009564m Prunus persica ppa009564m I 0.750
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.750
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.750
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.739
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.735
29983.m003293 Ricinus communis 29983.m003293 I 0.735
30170.m013735 Ricinus communis 30170.m013735 I 0.735
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.735
MDP0000233609 Malus x domestica MDP0000233609 I 0.735
mgf016660m Mimulus guttatus mgf016660m I 0.735
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.735
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.725
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.721
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.721
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.721
29923.m000811 Ricinus communis 29923.m000811 I 0.721
SB01G038700 Sorghum bicolor Sb01g038700 I 0.721
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.706
GRMZM2G303915 Zea mays GRMZM2G303915 I 0.706
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.706
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.706