Medtr3g159840 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr3g159840 T54499_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.868
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr3g159840.1 RRM 31 97

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

114 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.970
PK21213.1 Cannabis sativa PK21213.1 I 0.955
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.955
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.941
mgf017214m Mimulus guttatus mgf017214m I 0.941
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.926
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.926
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.926
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.897
MDP0000138486 Malus x domestica MDP0000138486 I 0.896
MDP0000744398 Malus x domestica MDP0000744398 I 0.882
ppa009964m Prunus persica ppa009964m I 0.882
MDP0000488395 Malus x domestica MDP0000488395 I 0.882
MDP0000548950 Malus x domestica MDP0000548950 I 0.882
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.881
CU179634_3 Medicago truncatula CU179634_3 I 0.881
30076.m004440 Ricinus communis 30076.m004440 I 0.868
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.868
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.868
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.868
PK14266.1 Cannabis sativa PK14266.1 I 0.868
ppa016222m Prunus persica ppa016222m I 0.868
ppa009716m Prunus persica ppa009716m I 0.868
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.853
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.853
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.853
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.853
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.853
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.853
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.853
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.853
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.853
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.838
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.838
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.838
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.838
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.836
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.836
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.826
PK15672.1 Cannabis sativa PK15672.1 I 0.826
MDP0000284454 Malus x domestica MDP0000284454 I 0.824
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.824
MDP0000184420 Malus x domestica MDP0000184420 I 0.824
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.824
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.824
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.821
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.812
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.812
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.812
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.806
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.797
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.797
29908.m006046 Ricinus communis 29908.m006046 I 0.794
MDP0000134468 Malus x domestica MDP0000134468 I 0.794
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.791
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.791
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.791
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.791
SB03G041530 Sorghum bicolor Sb03g041530 I 0.791
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.791
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.791
ppa019392m Prunus persica ppa019392m I 0.783
ppa018926m Prunus persica ppa018926m I 0.783
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.783
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.783
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.783
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.783
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.776
MDP0000181802 Malus x domestica MDP0000181802 N 0.776
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.776
MDP0000271231 Malus x domestica MDP0000271231 N 0.776
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.776
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.776
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.776
30170.m013735 Ricinus communis 30170.m013735 I 0.776
29983.m003293 Ricinus communis 29983.m003293 I 0.776
ppa018603m Prunus persica ppa018603m I 0.768
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.768
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.768
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.765
MDP0000233609 Malus x domestica MDP0000233609 I 0.765
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.765
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.761
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.761
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.761
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.761
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.761
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.761
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.761
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.761
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.761
ppa009564m Prunus persica ppa009564m I 0.761
SB03G046430 Sorghum bicolor Sb03g046430 N 0.761
MDP0000857317 Malus x domestica MDP0000857317 I 0.754
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.754
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.754
MDP0000118777 Malus x domestica MDP0000118777 I 0.754
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.754
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.750
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.746
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.746
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.739
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.739
SB04G030020 Sorghum bicolor Sb04g030020 I 0.735
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.735
mgf002440m Mimulus guttatus mgf002440m N 0.731
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.731
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.725
mgf016660m Mimulus guttatus mgf016660m I 0.721
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.721
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.716
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.716
GRMZM2G303915 Zea mays GRMZM2G303915 I 0.706
GRMZM2G092493 Zea mays GRMZM2G092493 I 0.701