29650.m000268 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 29650.m000268 T48669_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29650.m000268 RRM 115 181
29650.m000268 RRM 212 280

Links

Other RRM family RBPs
Other Ricinus communis RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009298m Prunus persica ppa009298m N 0.905
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.766
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.898
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.883
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.759
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.766
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.781
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.774
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.788
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.788
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.766
Cucsa.071470 Cucumis sativus Cucsa.071470 N 0.746
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.781
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.788
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.788
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.788
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.788
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.766
mgf005336m Mimulus guttatus mgf005336m N 0.766
ppa006808m Prunus persica ppa006808m N 0.781
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.752
MDP0000233630 Malus x domestica MDP0000233630 N 0.766
MDP0000155814 Malus x domestica MDP0000155814 N 0.723
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.854
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.752
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.781
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.766
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.759
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.730
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.774
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.737
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.730
mgf014445m Mimulus guttatus mgf014445m N 0.759
mgf013366m Mimulus guttatus mgf013366m N 0.759
mgf012896m Mimulus guttatus mgf012896m N 0.788
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.788
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.788
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.766
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.752
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.737
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.745
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.730
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.774
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.737
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.766
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.737
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.745
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.810
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.781
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.766
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.796
PK28889.1 Cannabis sativa PK28889.1 N 0.898
PK12463.1 Cannabis sativa PK12463.1 N 0.766
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.810
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.745
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.788
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.920
30068.m002593 Ricinus communis 30068.m002593 N 0.788
29485.m000140 Ricinus communis 29485.m000140 N 0.788
SB10G021290 Sorghum bicolor Sb10g021290 N 0.774
SB07G001560 Sorghum bicolor Sb07g001560 N 0.766
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.752
SB03G002180 Sorghum bicolor Sb03g002180 N 0.737
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.774
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.752
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.766
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.774
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.788
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.803
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.912
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.745
PK04894.1 Cannabis sativa PK04894.1 N 0.796