30008.m000830 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 30008.m000830 T48733_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
30008.m000830 RRM 8 76
30008.m000830 RRM 112 181

Links

Other RRM family RBPs
Other Ricinus communis RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK00513.1 Cannabis sativa PK00513.1 N 0.799
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.712
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.914
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.813
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.835
Glyma10g33320.1 Glycine max Glyma10g33320.1 N 0.827
Glyma20g34330.1 Glycine max Glyma20g34330.1 N 0.813
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.734
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.770
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.777
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.770
MDP0000130865 Malus x domestica MDP0000130865 N 0.777
MDP0000173934 Malus x domestica MDP0000173934 N 0.813
MDP0000217366 Malus x domestica MDP0000217366 N 0.820
MDP0000286430 Malus x domestica MDP0000286430 N 0.763
MDP0000320861 Malus x domestica MDP0000320861 N 0.799
ppa005309m Prunus persica ppa005309m N 0.842
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 0.806
cassava12600.valid.m1 Manihot esculenta cassava12600.valid.m1 N 0.806
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 0.806
AT2G33410 Arabidopsis thaliana AT2G33410-TAIR-G N 0.716
AT4G14300 Arabidopsis thaliana AT4G14300-TAIR-G N 0.752
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.705
BRADI3G28430 Brachypodium distachyon BRADI3G28430 N 0.748
XM_002879403.1 Arabidopsis lyrata fgenesh2_kg.4__1344__AT2G33410.1 N 0.716
XM_002870277.1 Arabidopsis lyrata fgenesh2_kg.7__2913__AT4G14300.1 N 0.752
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.835
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.842
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.784
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.755
B9HKT4_POPTR Populus trichocarpa POPTR_0008s17030 N 0.871
B9HSS5_POPTR Populus trichocarpa POPTR_0010s07790 N 0.842
B9IBE6_POPTR Populus trichocarpa POPTR_0014s18470 N 0.755
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.777
27613.m000635 Ricinus communis 27613.m000635 N 0.719
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 0.806
ppa005979m Prunus persica ppa005979m N 0.820