CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
cassava31392.valid.m1
(
Manihot esculenta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
cassava31392.valid.m1
T49295_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava31392.valid.m1
RRM
8
76
LFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRTTGRARGFGFVVFTDPAVAERVIMDKHMIDGRTVE
cassava31392.valid.m1
RRM
108
177
IFVGGLASTVTDSDFKKYFEQFGNITDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLHKTFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Manihot esculenta
RBPs
85 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
27613.m000635
Ricinus communis
27613.m000635
N
0.978
ppa004834m
Prunus persica
ppa004834m
N
0.935
ppa005122m
Prunus persica
ppa005122m
N
0.935
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.935
MDP0000204698
Malus x domestica
MDP0000204698
N
0.928
PK25912.1
Cannabis sativa
PK25912.1
N
0.928
MDP0000609551
Malus x domestica
MDP0000609551
N
0.921
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.921
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.921
MDP0000188788
Malus x domestica
MDP0000188788
N
0.921
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.906
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.899
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.893
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.892
MDP0000320618
Malus x domestica
MDP0000320618
N
0.892
ppa005119m
Prunus persica
ppa005119m
N
0.892
ppa005132m
Prunus persica
ppa005132m
N
0.892
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.892
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.892
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.892
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.892
MDP0000642684
Malus x domestica
MDP0000642684
N
0.885
MDP0000907782
Malus x domestica
MDP0000907782
N
0.885
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.879
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.878
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.878
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.878
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.871
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.871
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.871
29608.m000212
Ricinus communis
29608.m000212
N
0.871
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.863
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.863
mgf009385m
Mimulus guttatus
mgf009385m
N
0.863
30048.m000319
Ricinus communis
30048.m000319
N
0.863
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.857
mgf012147m
Mimulus guttatus
mgf012147m
N
0.856
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.856
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.856
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.849
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.849
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.849
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.842
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.842
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.842
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.842
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.842
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.837
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.835
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.835
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.835
PK13457.1
Cannabis sativa
PK13457.1
N
0.835
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.827
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.827
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.827
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.827
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.820
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.820
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.820
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.820
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.813
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.813
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.813
mgf004139m
Mimulus guttatus
mgf004139m
N
0.806
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.806
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.806
mgf009486m
Mimulus guttatus
mgf009486m
N
0.786
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.784
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.784
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.770
Medtr4g155980
Medicago truncatula
Medtr4g155980
N
0.770
SB05G025410
Sorghum bicolor
Sb05g025410
N
0.748
estExt_Genewise1Plus.C_180065
Selaginella moellendorfii
estExt_Genewise1Plus.C_180065
N
0.734
CM1092.170.nc
Lotus japonicus
CM1092.170.nc
N
0.730
PDK_20s1770661g001
Phoenix dactylifera
PDK_20s1770661g001
N
0.727
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.727
Sb01g019610
Sorghum bicolor
Sb01g019610
N
0.719
AC198361.3_FG004
Zea mays
AC198361.3_FG004
N
0.712
Cucsa.037090
Cucumis sativus
Cucsa.037090
N
0.712
GRMZM2G167505
Zea mays
GRMZM2G167505
N
0.712
30008.m000830
Ricinus communis
30008.m000830
N
0.712
GRMZM2G176918
Zea mays
GRMZM2G176918
N
0.712
cassava7388.valid.m1
Manihot esculenta
cassava7388.valid.m1
N
0.712
ppa005309m
Prunus persica
ppa005309m
N
0.705
Cucsa.383370
Cucumis sativus
Cucsa.383370
N
0.705