Aqu1.225190 (Amphimedon queenslandica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Aqu1.225190 T49023_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.771
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Aqu1.225190 RRM 153 222

Links

Other RRM family RBPs
Other Amphimedon queenslandica RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1 Homo sapiens ENSG00000100836 D 0.761
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.746
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.761
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.704
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.771
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.704
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.771
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.761
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.761
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.761
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.761
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.761
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.771
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.761
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.761
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.746
PHUM037550 Pediculus humanus PHUM037550 I 0.761
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.789
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.786
AAR26262 Xenopus laevis AAR26262 I 0.746
AAH73657 Xenopus laevis AAH73657 I 0.746
AAH45063 Xenopus laevis AAH45063 I 0.746
AAG36902 Xenopus laevis AAG36902 I 0.746
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.729
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.761
Q9DDY9 Xenopus laevis Q9DDY9 I 0.746
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.761
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.789
PredSwiss_CON654.3 Pneumocystis carinii PredSwiss_CON654.3 I 0.704
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.800
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.771
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.732
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.761
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.732
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.732
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.746
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.761
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.761
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.761
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.761
CRE07990 Caenorhabditis remanei CRE07990 I 0.732
CJA15148 Caenorhabditis japonica CJA15148 I 0.704
CBN16301 Caenorhabditis brenneri CBN16301 I 0.718
CBN10290 Caenorhabditis brenneri CBN10290 I 0.732
CBN00953 Caenorhabditis brenneri CBN00953 I 0.732
CBG03741 Caenorhabditis briggsae CBG03741 I 0.732
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.746
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.746
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.743
LOAG_03634 Loa loa LOAG_03634 I 0.743
Bm1_48895 Brugia malayi Bm1_48895 I 0.743
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.743
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.761
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.761
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.746
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.761
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.746
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.761
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.761
PABPN1 Gallus gallus ENSGALG00000006242 I 0.718
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.771
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.732
LOC100055599 Equus caballus ENSECAG00000011652 I 0.761
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.761
pabpn1 Danio rerio ENSDARG00000045373 I 0.757
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.761
ENSCSAVG00000002001 Ciona savignyi ENSCSAVG00000002001 I 0.729
UM02401 Ustilago maydis UM02401 N 0.704
PABPN1L Monodelphis domestica ENSMODG00000003873 N 0.718
e_gw1.4.1867.1 Agaricus bisporus e_gw1.4.1867.1 N 0.704