e_gw1.11.964.1 (Ostreococcus RCC809)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw1.11.964.1 T49719_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.11.964.1 RRM 18 85

Links

Other RRM family RBPs
Other Ostreococcus RCC809 RBPs

99 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.706
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.768
29868.m000351 Ricinus communis 29868.m000351 N 0.765
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.721
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.765
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.739
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.750
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.710
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.706
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.706
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.706
SB01G003790 Sorghum bicolor Sb01g003790 N 0.779
PPA24922 Pristionchus pacificus PPA24922 N 0.706
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.706
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.706
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.706
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.765
ISCW024082 Ixodes scapularis ISCW024082 N 0.706
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.765
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.710
PHUM617060 Pediculus humanus PHUM617060 N 0.721
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.765
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.779
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.750
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.750
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.721
1600010087 Ostreococcus tauri 1600010087 N 0.838
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.706
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.754
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.779
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.779
MDP0000185506 Malus x domestica MDP0000185506 N 0.765
MDP0000916880 Malus x domestica MDP0000916880 N 0.706
ppa013405m Prunus persica ppa013405m N 0.765
ppa013407m Prunus persica ppa013407m N 0.765
Smp_032060 Schistosoma mansoni Smp_032060 N 0.706
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.706
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.754
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.706
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.750
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.735
eugene.1500010066 Ostreococcus lucimarinus eugene.1500010066 N 0.838
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.739
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.754
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.765
mgf016428m Mimulus guttatus mgf016428m N 0.754
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.779
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.779
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.706
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.721
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.706
CBG06987 Caenorhabditis briggsae CBG06987 N 0.721
CBN08400 Caenorhabditis brenneri CBN08400 N 0.721
CJA01433 Caenorhabditis japonica CJA01433 N 0.721
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.706
CRE22109 Caenorhabditis remanei CRE22109 N 0.721
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.706
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.706
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.706
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.706
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.765
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.721
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.765
LOAG_04189 Loa loa LOAG_04189 N 0.710
PK21780.1 Cannabis sativa PK21780.1 N 0.765
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.706
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.706
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.706
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.706
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.706
AAEL005909 Aedes aegypti AAEL005909 N 0.706
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.768
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.765
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.706
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.706
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.765
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.706
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.706
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.706
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.706
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.706
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.706
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.706
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.706
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.706
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.706
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.706
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.706
sf3b14 Danio rerio ENSDARG00000009753 N 0.706
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.706
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.706
LOC100056247 Equus caballus ENSECAG00000015618 N 0.706
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.706
AC008073.5 Homo sapiens ENSG00000115128 N 0.706
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.706
SF3B14 Gallus gallus ENSGALG00000016501 N 0.706
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.706
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.706
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.721