PPA24922 (Pristionchus pacificus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PPA24922 T45834_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PPA24922 RRM 20 87

Links

Other RRM family RBPs
Other Pristionchus pacificus RBPs

126 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBN08400 Caenorhabditis brenneri CBN08400 N 0.926
CRE22109 Caenorhabditis remanei CRE22109 N 0.926
CBG06987 Caenorhabditis briggsae CBG06987 N 0.926
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.926
Minc01156 Meloidogyne incognita Minc01156 N 0.912
LOAG_04189 Loa loa LOAG_04189 N 0.899
CJA01433 Caenorhabditis japonica CJA01433 N 0.897
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.882
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.882
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.882
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.882
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.882
68671 Helobdella robusta 68671 N 0.868
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.853
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.838
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.838
LOC100056247 Equus caballus ENSECAG00000015618 N 0.838
SF3B14 Gallus gallus ENSGALG00000016501 N 0.838
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.838
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.838
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.838
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.838
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.838
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.838
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.838
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.838
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.838
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.838
AC008073.5 Homo sapiens ENSG00000115128 N 0.838
AAEL005909 Aedes aegypti AAEL005909 N 0.838
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.838
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.838
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.838
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.838
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.838
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.838
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.838
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.838
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.838
sf3b14 Danio rerio ENSDARG00000009753 N 0.838
PHUM617060 Pediculus humanus PHUM617060 N 0.838
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.838
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.838
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.838
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.838
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.838
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.838
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.838
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.838
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.838
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.838
ISCW024082 Ixodes scapularis ISCW024082 N 0.838
GI13232 Drosophila mojavensis FBgn0135989 N 0.826
GL22529 Drosophila persimilis FBgn0160121 N 0.826
GM13852 Drosophila sechellia FBgn0168783 N 0.826
GJ12004 Drosophila virilis FBgn0199256 N 0.826
GD13137 Drosophila simulans FBgn0184859 N 0.826
GK17258 Drosophila willistoni FBgn0219257 N 0.826
GE20495 Drosophila yakuba FBgn0068445 N 0.826
CG13298 Drosophila melanogaster FBgn0035692 N 0.826
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.826
GF10910 Drosophila ananassae FBgn0087950 N 0.826
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.826
GG14070 Drosophila erecta FBgn0106332 N 0.826
GH16287 Drosophila grimshawi FBgn0123758 N 0.826
Smp_032060 Schistosoma mansoni Smp_032060 N 0.824
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.824
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.824
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.824
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.824
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.824
AGAP002780 Anopheles gambiae AGAP002780 N 0.824
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.824
AAH57709 Xenopus laevis AAH57709 N 0.824
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.809
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.809
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.794
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.794
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.794
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.783
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.783
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.779
TA13725 Theileria annulata TA13725 N 0.765
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.765
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.765
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.754
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.750
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.739
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.735
EDO06533.1 Babesia bovis EDO06533.1 N 0.735
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.735
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.735
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.735
TP02_0539 Theileria parva TP02_0539 N 0.735
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.735
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.735
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.725
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.725
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.725
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.725
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.725
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.725
PK21780.1 Cannabis sativa PK21780.1 N 0.721
ppa013407m Prunus persica ppa013407m N 0.721
SB01G003790 Sorghum bicolor Sb01g003790 N 0.721
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.721
29868.m000351 Ricinus communis 29868.m000351 N 0.721
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.721
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.721
ppa013405m Prunus persica ppa013405m N 0.721
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.721
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.721
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.721
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.721
MDP0000185506 Malus x domestica MDP0000185506 N 0.721
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.721
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.721
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.710
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.710
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.710
mgf016428m Mimulus guttatus mgf016428m N 0.710
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.710
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.706
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.706
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.706
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.706