LOAG_04189 (Loa loa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOAG_04189 T29600_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOAG_04189T0 RRM 69 136

Links

Other RRM family RBPs
Other Loa loa RBPs

137 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GG14070 Drosophila erecta FBgn0106332 N 0.912
GH16287 Drosophila grimshawi FBgn0123758 N 0.912
GF10910 Drosophila ananassae FBgn0087950 N 0.912
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.912
GE20495 Drosophila yakuba FBgn0068445 N 0.912
GI13232 Drosophila mojavensis FBgn0135989 N 0.912
GL22529 Drosophila persimilis FBgn0160121 N 0.912
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.912
GK17258 Drosophila willistoni FBgn0219257 N 0.912
GJ12004 Drosophila virilis FBgn0199256 N 0.912
GD13137 Drosophila simulans FBgn0184859 N 0.912
CG13298 Drosophila melanogaster FBgn0035692 N 0.912
GM13852 Drosophila sechellia FBgn0168783 N 0.912
PPA24922 Pristionchus pacificus PPA24922 N 0.899
CRE22109 Caenorhabditis remanei CRE22109 N 0.884
CBN08400 Caenorhabditis brenneri CBN08400 N 0.884
Minc01156 Meloidogyne incognita Minc01156 N 0.884
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.884
CBG06987 Caenorhabditis briggsae CBG06987 N 0.884
CJA01433 Caenorhabditis japonica CJA01433 N 0.870
AAEL005909 Aedes aegypti AAEL005909 N 0.870
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.870
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.870
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.855
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.855
AGAP002780 Anopheles gambiae AGAP002780 N 0.855
ISCW024082 Ixodes scapularis ISCW024082 N 0.855
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.855
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.855
PHUM617060 Pediculus humanus PHUM617060 N 0.855
68671 Helobdella robusta 68671 N 0.841
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.841
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.841
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.838
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.826
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.826
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.826
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.826
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.826
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.826
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.826
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.826
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.826
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.826
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.826
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.826
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.826
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.826
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.826
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.826
sf3b14 Danio rerio ENSDARG00000009753 N 0.826
LOC100056247 Equus caballus ENSECAG00000015618 N 0.826
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.826
AC008073.5 Homo sapiens ENSG00000115128 N 0.826
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.826
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.826
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.826
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.826
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.826
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.826
SF3B14 Gallus gallus ENSGALG00000016501 N 0.826
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.826
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.826
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.826
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.826
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.826
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.826
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.826
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.826
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.826
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.812
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.812
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.812
AAH57709 Xenopus laevis AAH57709 N 0.812
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.809
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.797
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.797
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.797
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.783
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.783
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.783
Smp_032060 Schistosoma mansoni Smp_032060 N 0.783
mgf016428m Mimulus guttatus mgf016428m N 0.779
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.779
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.768
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.768
TA13725 Theileria annulata TA13725 N 0.768
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.768
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.768
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.765
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.765
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.765
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.765
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.765
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.765
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.754
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.754
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.754
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.754
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.754
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.754
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.754
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.754
SB01G003790 Sorghum bicolor Sb01g003790 N 0.754
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.750
PITG_10282 Phytophthora infestans PITG_10282 N 0.750
s_454910 Phytophthora sojae s_454910 N 0.750
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.750
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.750
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.739
ppa013407m Prunus persica ppa013407m N 0.739
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.739
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.739
PK21780.1 Cannabis sativa PK21780.1 N 0.739
MDP0000185506 Malus x domestica MDP0000185506 N 0.739
ppa013405m Prunus persica ppa013405m N 0.739
TP02_0539 Theileria parva TP02_0539 N 0.739
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.739
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.739
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.739
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.739
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.739
29868.m000351 Ricinus communis 29868.m000351 N 0.739
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.735
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.735
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.735
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.725
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.725
EDO06533.1 Babesia bovis EDO06533.1 N 0.725
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.725
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.710
PVX_123875 Plasmodium vivax PVX_123875 N 0.710
PFL1200c Plasmodium falciparum PFL1200c N 0.710
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.710
1600010087 Ostreococcus tauri 1600010087 N 0.710
NCLIV_001260 Neospora caninum NCLIV_001260 N 0.706
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.706