FER_chlre3.3.376.1.5 (Chlamydomonas reinhardtii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FER_chlre3.3.376.1.5 T51734_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.839
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.750
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.741
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.713
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FER_chlre3.3.376.1.5 RRM 33 103
FER_chlre3.3.376.1.5 RRM 120 191

Links

Other RRM family RBPs
Other Chlamydomonas reinhardtii RBPs

123 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
sf3b4 Danio rerio ENSDARG00000018574 D 0.762
sap-49 Caenorhabditis elegans C08B11.5 D 0.713
Smp_067420 Schistosoma mansoni Smp_067420 D 0.741
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.839
PHUM263440 Pediculus humanus PHUM263440 I 0.755
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.860
SB01G020190 Sorghum bicolor Sb01g020190 I 0.839
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.755
30183.m001303 Ricinus communis 30183.m001303 I 0.832
59062 Aureococcus anophagefferens 59062 I 0.720
99199 Helobdella robusta 99199 I 0.748
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.874
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.867
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.741
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.790
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.839
ISCW010601 Ixodes scapularis ISCW010601 I 0.776
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.881
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.762
Spx Drosophila melanogaster FBgn0015818 I 0.720
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.727
GF20385 Drosophila ananassae FBgn0097392 I 0.727
GG19577 Drosophila erecta FBgn0111779 I 0.727
GH17589 Drosophila grimshawi FBgn0125059 I 0.734
GI16317 Drosophila mojavensis FBgn0139065 I 0.734
GL21313 Drosophila persimilis FBgn0158906 I 0.727
GM12470 Drosophila sechellia FBgn0167407 I 0.720
GJ15655 Drosophila virilis FBgn0202845 I 0.734
GK19717 Drosophila willistoni FBgn0221715 I 0.727
GE16738 Drosophila yakuba FBgn0234234 I 0.727
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.839
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.734
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.790
estExtDG_fgenesh_newKGs_kg.C_520059 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_520059 I 0.727
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.832
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.867
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.762
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.839
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.839
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.790
MDP0000131129 Malus x domestica MDP0000131129 I 0.867
MDP0000320945 Malus x domestica MDP0000320945 I 0.867
ppa007508m Prunus persica ppa007508m I 0.853
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.769
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.755
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.769
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.832
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.797
estExt_fgenesh1_pg.C_220114 Monosiga brevicollis estExt_fgenesh1_pg.C_220114 I 0.713
AAH77458 Xenopus laevis AAH77458 I 0.769
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.762
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.755
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.783
estExt_Genewise1Plus.C_20198 Mucor circinelloides estExt_Genewise1Plus.C_20198 I 0.727
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.713
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.776
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.762
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.867
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.860
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.797
AAH45264 Xenopus laevis AAH45264 I 0.769
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.755
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.832
CBN06124 Caenorhabditis brenneri CBN06124 I 0.713
CJA19238 Caenorhabditis japonica CJA19238 I 0.713
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.755
CRE01639 Caenorhabditis remanei CRE01639 I 0.713
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.762
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.762
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.748
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.713
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.762
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.762
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.762
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.839
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.818
XM_002883791.1 Arabidopsis lyrata Al_scaffold_0003_3307 I 0.734
LOAG_01189 Loa loa LOAG_01189 I 0.720
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.755
RO3G_10200 Rhizopus oryzae RO3G_10200 I 0.734
RO3G_15452 Rhizopus oryzae RO3G_15452 I 0.734
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.762
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.720
PK08238.1 Cannabis sativa PK08238.1 I 0.874
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.762
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.755
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.755
AAEL013795 Aedes aegypti AAEL013795 I 0.755
AGAP001538 Anopheles gambiae AGAP001538 I 0.755
Bm1_43460 Brugia malayi Bm1_43460 I 0.713
LOC100054350 Equus caballus ENSECAG00000024737 I 0.762
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.762
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.762
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.755
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.762
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.762
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.762
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.762
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.731
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.762
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.762
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.762
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.762
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.762
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.762
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.762
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.762
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.762
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.762
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.762
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.706
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.762
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.762
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.762
SF3B4 Homo sapiens ENSG00000143368 I 0.762
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.762
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.762
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.762
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.762
SF3B4 Gallus gallus ENSGALG00000013352 I 0.762
s_462942 Phytophthora sojae s_462942 N 0.734
estExt_Genewise1Plus.C_00387 Phytophthora capsici estExt_Genewise1Plus.C_00387 N 0.720
estExt_fgenesh1_pm.C_120017 Batrachochytrium dendrobatidis estExt_fgenesh1_pm.C_120017 N 0.713