fgenesh1_pm.C_scaffold_1000427 (Schizophyllum commune)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pm.C_scaffold_1000427 T52062_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_1000427 RRM 17 84

Links

Other RRM family RBPs
Other Schizophyllum commune RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa005661m Prunus persica ppa005661m I 0.000
mgf011075m Mimulus guttatus mgf011075m I 0.000
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.000
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.000
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.000
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.000
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.000
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.000
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.000
mgf012795m Mimulus guttatus mgf012795m I 0.000
ppa005903m Prunus persica ppa005903m I 0.000
MDP0000200455 Malus x domestica MDP0000200455 I 0.000
MDP0000136330 Malus x domestica MDP0000136330 I 0.000
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.000
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.000
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.000
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.000
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.000
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.000
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.000
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.000
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.000
PK00840.1 Cannabis sativa PK00840.1 I 0.000
PK15272.1 Cannabis sativa PK15272.1 I 0.000
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.000
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.000
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.000
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.000
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.000
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.000
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.000
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.000
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.000
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.000
30170.m014217 Ricinus communis 30170.m014217 I 0.000
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.000
29801.m003218 Ricinus communis 29801.m003218 I 0.000
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.000
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.000
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.000
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.000
mgf013285m Mimulus guttatus mgf013285m N 0.000