EFA74823.1 (Polysphondylium pallidum)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 EFA74823.1 T54331_0.6 NCBI (2013-Jan-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
EFA74823.1 RRM 34 104

Links

Other RRM family RBPs
Other Polysphondylium pallidum RBPs

122 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.732
LOC_Os02g39890 Oryza sativa LOC_Os02g39890 N 0.732
NCU00210 Neurospora crassa NCU00210 N 0.789
PHUM535920 Pediculus humanus PHUM535920 N 0.732
A9PIB0_POPTR Populus trichocarpa POPTR_0007s01170 N 0.718
SB04G025800 Sorghum bicolor Sb04g025800 N 0.732
cbc2 Schizosaccharomyces pombe SPBC13A2.01c N 0.732
29983.m003140 Ricinus communis 29983.m003140 N 0.718
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.718
cassava43645.valid.m1 Manihot esculenta cassava43645.valid.m1 N 0.746
cassava43646.valid.m1 Manihot esculenta cassava43646.valid.m1 N 0.746
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.746
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.803
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.817
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.761
GSVIVG00020599001 Vitis vinifera GSVIVG00020599001 N 0.732
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.718
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.718
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.732
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.732
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.746
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.732
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.732
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.732
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.732
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.732
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.718
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.732
XM_002863560.1 Arabidopsis lyrata fgenesh2_kg.8__389__AT5G44200.2 N 0.732
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.775
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.789
e_gw1.40.70.1 Melampsora laricis populina e_gw1.40.70.1 N 0.718
PredSwiss_ASS2010_2397.2 Pneumocystis carinii PredSwiss_ASS2010_2397.2 N 0.707
PredSwiss_CON682.3 Pneumocystis carinii PredSwiss_CON682.3 N 0.707
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.732
chr3.CM0160.780.nd Lotus japonicus chr3.CM0160.780.nd N 0.732
fgenesh1_pg.C_scaffold_1000747 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000747 N 0.775
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.761
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.746
MDP0000315402 Malus x domestica MDP0000315402 N 0.732
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.775
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.761
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.746
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.761
ppa010346m Prunus persica ppa010346m N 0.732
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.775
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.732
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.718
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.789
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.775
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.775
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.789
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.789
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.789
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.901
Glyma12g33400.1 Glycine max Glyma12g33400.1 N 0.746
Glyma13g37030.1 Glycine max Glyma13g37030.1 N 0.746
gw1.1.1171.1 Sporobolomyces roseus gw1.1.1171.1 N 0.704
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.803
mgf009822m Mimulus guttatus mgf009822m N 0.704
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.718
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.718
PGTG_01720 Puccinia graminis PGTG_01720 N 0.746
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.775
SJAG_01064 Schizosaccharomyces japonicus SJAG_01064 N 0.761
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.775
SOCG_01831 Schizosaccharomyces octosporus SOCG_01831 N 0.775
SPOG_01217 Schizosaccharomyces cryophilus SPOG_01217 N 0.761
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.803
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.775
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.761
TERG_03424 Trichophyton rubrum TERG_03424 N 0.761
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.761
VDAG_05874 Verticillium dahliae VDAG_05874 N 0.761
VDBG_06810 Verticillium albo atrum VDBG_06810 N 0.761
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.761
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.761
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.775
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.761
CHGG_03355 Chaetomium globosum CHGG_03355 N 0.722
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.761
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.761
FGSG_05488 Fusarium graminearum FGSG_05488 N 0.761
FOXG_09405 Fusarium oxysporum FOXG_09405 N 0.708
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.789
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.789
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.761
LOAG_03270 Loa loa LOAG_03270 N 0.704
MCYG_04468 Microsporum canis MCYG_04468 N 0.761
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.789
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.704
PK11911.1 Cannabis sativa PK11911.1 N 0.732
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.732
NCBP2 Equus caballus ENSECAG00000016153 N 0.732
NCBP2 Homo sapiens ENSG00000114503 N 0.732
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.732
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.718
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.718
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.732
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.732
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.732
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.718
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.704
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.704
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.732
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.732
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.718
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.732
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.718
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.732
CBP20 Arabidopsis thaliana AT5G44200-TAIR-G N 0.732
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.746
ACLA_080400 Aspergillus clavatus CADACLAG00007885 N 0.704
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.746
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.775
An12g03930 Aspergillus niger CADANGAG00009835 N 0.761
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.775
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.901
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.732
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.732
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.718
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.718