fgenesh1_pg.C_scaffold_1000747 (Cryphonectria parasitica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pg.C_scaffold_1000747 T56554_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_1000747 RRM 56 126

Links

Other RRM family RBPs
Other Cryphonectria parasitica RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.901
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.887
estExt_fgenesh1_pm.C_20437 Schizophyllum commune estExt_fgenesh1_pm.C_20437 N 0.727
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.944
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.704
e_gw1.40.70.1 Melampsora laricis populina e_gw1.40.70.1 N 0.761
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.915
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.803
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.944
e_gw1.121.83.1 Postia placenta e_gw1.121.83.1 N 0.727
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.958
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.704
cbc2 Schizosaccharomyces pombe SPBC13A2.01c N 0.803
PHUM535920 Pediculus humanus PHUM535920 N 0.746
NCU00210 Neurospora crassa NCU00210 N 0.915
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.732
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.704
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.930
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.944
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.915
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.915
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.958
KLTH0H05214g Kluyveromyces thermotolerans KLTH0H05214g N 0.704
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.859
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.901
PredSwiss_CON682.3 Pneumocystis carinii PredSwiss_CON682.3 N 0.747
PredSwiss_ASS2010_2397.2 Pneumocystis carinii PredSwiss_ASS2010_2397.2 N 0.747
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.775
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.887
gwh2.1.1054.1 Phanerochaete chrysosporium gwh2.1.1054.1 N 0.740
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.718
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.718
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.803
gw1.1.1171.1 Sporobolomyces roseus gw1.1.1171.1 N 0.789
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.775
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.817
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.775
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.915
An12g03930 Aspergillus niger CADANGAG00009835 N 0.901
PGTG_01720 Puccinia graminis PGTG_01720 N 0.761
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.887
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.887
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.915
MCYG_04468 Microsporum canis MCYG_04468 N 0.887
LOAG_03270 Loa loa LOAG_03270 N 0.704
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.887
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.930
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.944
FOXG_09405 Fusarium oxysporum FOXG_09405 N 0.847
FGSG_05488 Fusarium graminearum FGSG_05488 N 0.958
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.887
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.887
CHGG_03355 Chaetomium globosum CHGG_03355 N 0.847
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.887
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.915
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.887
SJAG_01064 Schizosaccharomyces japonicus SJAG_01064 N 0.803
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.887
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.915
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.887
ACLA_080400 Aspergillus clavatus CADACLAG00007885 N 0.831
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.732
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.732
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.732
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.704
VDBG_06810 Verticillium albo atrum VDBG_06810 N 0.930
VDAG_05874 Verticillium dahliae VDAG_05874 N 0.930
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.873
TERG_03424 Trichophyton rubrum TERG_03424 N 0.887
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.887
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.915
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.831
SPOG_01217 Schizosaccharomyces cryophilus SPOG_01217 N 0.775
SOCG_01831 Schizosaccharomyces octosporus SOCG_01831 N 0.789
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.732