fmr1 (Xenopus tropicalis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSXETG00000019647 T19772_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FXR1
M152_0.6 		Homo sapiens AYGACR RNAcompete
Ray et al.(2013)
RNCMPT00161 		0.777
FXR2
M020_0.6 		Homo sapiens DGACRRR RNAcompete
Ray et al.(2013)
RNCMPT00020 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000042153 KH 220 279
ENSXETP00000042153 KH 283 351
ENSXETP00000042520 KH 220 279
ENSXETP00000042520 KH 283 351

Links

Other KH family RBPs
Other Xenopus tropicalis RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30174.m009088 Ricinus communis 30174.m009088 N 0.000
ATE1 Arabidopsis thaliana AT1G13690-TAIR-G N 0.000
B9HIG1_POPTR Populus trichocarpa POPTR_0008s09710 N 0.000
B9HXI2_POPTR Populus trichocarpa POPTR_0010s16450 N 0.000
BGIOSIBCE012002 Oryza indica BGIOSIBCE012002 N 0.000
BRADI1G15040 Brachypodium distachyon BRADI1G15040 N 0.000
cassava7442.valid.m1 Manihot esculenta cassava7442.valid.m1 N 0.000
Cucsa.327930 Cucumis sativus Cucsa.327930 N 0.000
estExtDG_fgenesh_newKGs_kg.C_1720021 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_1720021 N 0.000
estExtDG_Genemark1.C_2940006 Emiliania huxleyi estExtDG_Genemark1.C_2940006 N 0.000
estExt_Genewise1.C_40283 Selaginella moellendorfii estExt_Genewise1.C_40283 N 0.000
Glyma01g07800.1 Glycine max Glyma01g07800.1 N 0.000
Glyma02g13280.1 Glycine max Glyma02g13280.1 N 0.000
GRMZM2G138572 Zea mays GRMZM2G138572 N 0.000
GSVIVG00010778001 Vitis vinifera GSVIVG00010778001 N 0.000
LOC_Os03g40310 Oryza sativa LOC_Os03g40310 N 0.000
MDP0000193642 Malus x domestica MDP0000193642 N 0.000
MDP0000219767 Malus x domestica MDP0000219767 N 0.000
MDP0000271129 Malus x domestica MDP0000271129 N 0.000
MDP0000319973 Malus x domestica MDP0000319973 N 0.000
MDP0000588137 Malus x domestica MDP0000588137 N 0.000
Medtr5g047590 Medicago truncatula Medtr5g047590 N 0.000
ppa012381m Prunus persica ppa012381m N 0.000
XM_002889971.1 Arabidopsis lyrata fgenesh2_kg.1__1483__AT1G13690.1 N 0.000