mex-3 (Caenorhabditis elegans)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 F53G12.5 T19777_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CG11360
M122_0.6 		Drosophila melanogaster GAGUDW RNAcompete
Ray et al.(2013)
RNCMPT00129 		0.835
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
F53G12.5a.1 KH 48 108
F53G12.5a.1 KH 138 197
F53G12.5a.2 KH 48 108
F53G12.5a.2 KH 138 197
F53G12.5b KH 79 139
F53G12.5b KH 166 225

Links

Other KH family RBPs
Other Caenorhabditis elegans RBPs

126 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
143355 Helobdella robusta 143355 N 0.000
143653 Helobdella robusta 143653 N 0.000
A1L3F4 Xenopus laevis A1L3F4 I 0.811
AAI28670 Xenopus laevis AAI28670 I 0.811
AAI30070 Xenopus laevis AAI30070 I 0.811
AAI30114 Xenopus laevis AAI30114 I 0.779
AAI30196 Xenopus laevis AAI30196 I 0.818
AAI33220 Xenopus laevis AAI33220 I 0.779
AAI42552 Xenopus laevis AAI42552 I 0.795
amel4_ncbi_hmm6985 Apis mellifera amel4_ncbi_hmm6985 I 0.828
Ame_R004658 Ailuropoda melanoleuca Ame_R004658 I 0.828
Ame_R007174 Ailuropoda melanoleuca Ame_R007174 I 0.811
Ame_R011921 Ailuropoda melanoleuca Ame_R011921 I 0.000
Ame_R015561 Ailuropoda melanoleuca Ame_R015561 I 0.826
BAH79688 Xenopus laevis BAH79688 I 0.811
BGIBMGA012436 Bombyx mori BGIBMGA012436 I 0.736
CG11360 Drosophila melanogaster FBgn0039920 D 0.835
D3ZFL6_RAT Rattus norvegicus ENSRNOG00000025142 I 0.000
ENSCING00000002603 Ciona intestinalis ENSCING00000002603 I 0.811
ENSCPOG00000008241 Cavia porcellus ENSCPOG00000008241 I 0.820
ENSOCUG00000012549 Oryctolagus cuniculus ENSOCUG00000012549 I 0.828
ENSOCUG00000014295 Oryctolagus cuniculus ENSOCUG00000014295 I 0.719
ENSPPYG00000000729 Pongo pygmaeus ENSPPYG00000000729 I 0.826
ENSPPYG00000006723 Pongo pygmaeus ENSPPYG00000006723 I 0.811
ENSPPYG00000009324 Pongo pygmaeus ENSPPYG00000009324 I 0.779
estExt_fgenesh2_pg.C_2010087 Branchiostoma floridae estExt_fgenesh2_pg.C_2010087 I 0.820
estExt_Genewise1.C_sca_540218 Lottia gigantea estExt_Genewise1.C_sca_540218 I 0.836
e_gw1.15.409.1 Daphnia pulex e_gw1.15.409.1 I 0.811
e_gw1.3.1475.1 Trichoplax adhaerens e_gw1.3.1475.1 I 0.000
e_gw1.312.50.1 Capitella teleta e_gw1.312.50.1 I 0.000
GA10947-RA Drosophila pseudoobscura FBgn0071003 I 0.835
GD24410 Drosophila simulans FBgn0195748 I 0.835
GE14558 Drosophila yakuba FBgn0232157 I 0.835
GF20555 Drosophila ananassae FBgn0097561 I 0.826
GG16398 Drosophila erecta FBgn0108630 I 0.835
GH23938 Drosophila grimshawi FBgn0131395 I 0.843
GJ18673 Drosophila virilis FBgn0205827 I 0.843
GK13594 Drosophila willistoni FBgn0215602 I 0.843
GL18139 Drosophila persimilis FBgn0155742 I 0.835
GM26809 Drosophila sechellia FBgn0181661 I 0.835
gw.320.9.1 Nematostella vectensis gw.320.9.1 I 0.835
LOC100063974 Equus caballus ENSECAG00000007279 N 0.000
LOC100410023 Callithrix jacchus ENSCJAG00000001902 I 0.828
LOC100410413 Callithrix jacchus ENSCJAG00000007711 I 0.826
MEX3A Sorex araneus ENSSARG00000009868 N 0.000
MEX3A Monodelphis domestica ENSMODG00000016954 I 0.826
MEX3A Anolis carolinensis ENSACAG00000003739 N 0.000
MEX3A Oryctolagus cuniculus ENSOCUG00000005640 I 0.826
MEX3A Bos taurus ENSBTAG00000019158 I 0.826
mex3a Xenopus tropicalis ENSXETG00000012704 N 0.000
MEX3A Ochotona princeps ENSOPRG00000002937 I 0.826
MEX3A Takifugu rubripes ENSTRUG00000007796 N 0.000
MEX3A Tetraodon nigroviridis ENSTNIG00000004473 N 0.000
MEX3A Taeniopygia guttata ENSTGUG00000003692 N 0.000
MEX3A Pan troglodytes ENSPTRG00000030373 N 0.000
MEX3A Pteropus vampyrus ENSPVAG00000010333 I 0.785
MEX3A Macaca mulatta ENSMMUG00000022307 I 0.826
MEX3A Meleagris gallopavo ENSMGAG00000015563 N 0.000
Mex3a Dipodomys ordii ENSDORG00000002921 I 0.826
MEX3A Danio rerio ENSDARG00000076638 I 0.785
MEX3A Loxodonta africana ENSLAFG00000009220 N 0.000
MEX3A Gorilla gorilla ENSGGOG00000004513 I 0.826
MEX3A Cavia porcellus ENSCPOG00000020219 I 0.826
MEX3A Gallus gallus ENSGALG00000014016 N 0.000
MEX3A Gasterosteus aculeatus ENSGACG00000013282 N 0.000
MEX3A Myotis lucifugus ENSMLUG00000010185 N 0.000
MEX3B Sorex araneus ENSSARG00000006007 I 0.000
MEX3B Takifugu rubripes ENSTRUG00000000367 I 0.803
MEX3B Procavia capensis ENSPCAG00000014150 I 0.000
MEX3B Gorilla gorilla ENSGGOG00000000597 I 0.811
MEX3B Equus caballus ENSECAG00000013497 I 0.811
MEX3B Loxodonta africana ENSLAFG00000006027 I 0.811
MEX3B Pan troglodytes ENSPTRG00000007373 I 0.811
MEX3B Pteropus vampyrus ENSPVAG00000000093 I 0.811
MEX3B Tetraodon nigroviridis ENSTNIG00000003398 I 0.803
MEX3B Callithrix jacchus ENSCJAG00000008043 I 0.811
MEX3B Homo sapiens ENSG00000183496 I 0.811
MEX3B Gasterosteus aculeatus ENSGACG00000012530 I 0.787
MEX3B Ochotona princeps ENSOPRG00000009604 I 0.811
MEX3B Dasypus novemcinctus ENSDNOG00000012736 I 0.770
Mex3b Mus musculus ENSMUSG00000057706 I 0.000
MEX3B Canis familiaris ENSCAFG00000013759 I 0.000
MEX3B Monodelphis domestica ENSMODG00000019387 I 0.811
MEX3B Danio rerio ENSDARG00000058369 I 0.811
MEX3B Bos taurus ENSBTAG00000016630 I 0.811
MEX3B Anolis carolinensis ENSACAG00000011072 I 0.000
MEX3B Macaca mulatta ENSMMUG00000018639 I 0.811
MEX3B Cavia porcellus ENSCPOG00000023663 I 0.779
MEX3B Otolemur garnettii ENSOGAG00000016362 I 0.000
MEX3B Macropus eugenii ENSMEUG00000002402 I 0.803
MEX3B Oryctolagus cuniculus ENSOCUG00000011603 I 0.000
MEX3C Echinops telfairi ENSETEG00000003647 I 0.000
MEX3C Takifugu rubripes ENSTRUG00000011888 I 0.820
Mex3c Dipodomys ordii ENSDORG00000007962 I 0.702
MEX3C Anolis carolinensis ENSACAG00000010265 I 0.000
MEX3C Tursiops truncatus ENSTTRG00000004570 I 0.828
MEX3C Dasypus novemcinctus ENSDNOG00000006544 I 0.828
mex3c Xenopus tropicalis ENSXETG00000022367 I 0.811
MEX3C Myotis lucifugus ENSMLUG00000012585 I 0.702
MEX3C Gasterosteus aculeatus ENSGACG00000007490 I 0.820
MEX3C Danio rerio ENSDARG00000068971 I 0.000
MEX3C Canis familiaris ENSCAFG00000000162 I 0.811
MEX3C Choloepus hoffmanni ENSCHOG00000004915 I 0.828
MEX3C Homo sapiens ENSG00000176624 I 0.828
MEX3C Equus caballus ENSECAG00000021727 I 0.828
MEX3C Erinaceus europaeus ENSEEUG00000010864 I 0.702
MEX3C Vicugna pacos ENSVPAG00000003137 I 0.702
MEX3C Macropus eugenii ENSMEUG00000015929 I 0.702
MEX3C Loxodonta africana ENSLAFG00000027818 I 0.828
MEX3C Pan troglodytes ENSPTRG00000010029 I 0.828
MEX3C Procavia capensis ENSPCAG00000009258 I 0.820
MEX3C Gorilla gorilla ENSGGOG00000014875 I 0.828
MEX3C Oryzias latipes ENSORLG00000004985 I 0.820
MEX3C Pteropus vampyrus ENSPVAG00000015135 I 0.828
Mex3c Mus musculus ENSMUSG00000037253 I 0.828
MEX3C Sorex araneus ENSSARG00000006940 I 0.702
MEX3C Microcebus murinus ENSMICG00000005815 I 0.702
MEX3C Tupaia belangeri ENSTBEG00000014438 I 0.702
MEX3C Monodelphis domestica ENSMODG00000011001 I 0.828
MEX3C Cavia porcellus ENSCPOG00000009646 I 0.828
MEX3C Macaca mulatta ENSMMUG00000023652 I 0.828
MEX3C Ornithorhynchus anatinus ENSOANG00000008116 I 0.000
Mex3c Rattus norvegicus ENSRNOG00000015777 I 0.828
MEX3D Macropus eugenii ENSMEUG00000016404 I 0.803
MEX3D Meleagris gallopavo ENSMGAG00000002325 I 0.705
MEX3D Homo sapiens ENSG00000181588 I 0.779
MEX3D Ornithorhynchus anatinus ENSOANG00000011764 I 0.770
MEX3D Canis familiaris ENSCAFG00000023712 I 0.000
Mex3d Mus musculus ENSMUSG00000048696 I 0.779
MEX3D Bos taurus ENSBTAG00000044028 I 0.000
MEX3D Monodelphis domestica ENSMODG00000004116 I 0.803
MEX3D Myotis lucifugus ENSMLUG00000017018 N 0.000
MEX3D Ochotona princeps ENSOPRG00000008708 I 0.000
MEX3D Taeniopygia guttata ENSTGUG00000000201 I 0.787
MEX3D Gasterosteus aculeatus ENSGACG00000015299 I 0.795
MEX3D Gorilla gorilla ENSGGOG00000001083 I 0.779
MEX3D Takifugu rubripes ENSTRUG00000007986 I 0.795
MEX3D Tursiops truncatus ENSTTRG00000008132 I 0.779
MEX3D Tetraodon nigroviridis ENSTNIG00000015325 I 0.795
Mex3d Rattus norvegicus ENSRNOG00000030830 I 0.779
MEX3D Felis catus ENSFCAG00000002615 I 0.000
MEX3D Pan troglodytes ENSPTRG00000010208 I 0.779
MEX3D Procavia capensis ENSPCAG00000010972 I 0.000
MKNK2 Callithrix jacchus ENSCJAG00000000539 I 0.000
nasonia_NCBI_hmm456104 Nasonia vitripennis nasonia_NCBI_hmm456104 I 0.820
PHUM418100 Pediculus humanus PHUM418100 I 0.000
Ppa-mex-3 Pristionchus pacificus PPA08528 N 0.744
Q2YDI4_BOVIN Bos taurus ENSBTAG00000014886 I 0.000
XP_001175528.1 Strongylocentrotus purpuratus XP_001175528.1 I 0.811
XP_002168292.1 Hydra magnipapillata XP_002168292.1 I 0.802
XP_786425.2 Strongylocentrotus purpuratus XP_786425.2 I 0.811