Ppa-ncbp-2 (Pristionchus pacificus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PPA17381 T45799_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PPA17381 RRM 40 110

Links

Other RRM family RBPs
Other Pristionchus pacificus RBPs

92 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
91084 Helobdella robusta 91084 N 0.761
AAH72902 Xenopus laevis AAH72902 N 0.704
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.746
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.718
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.704
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.732
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.746
Bm1_02935 Brugia malayi Bm1_02935 N 0.789
CBG22194 Caenorhabditis briggsae CBG22194 N 0.831
CBN14593 Caenorhabditis brenneri CBN14593 N 0.831
Cbp20 Drosophila melanogaster FBgn0022943 N 0.761
CpipJ_CPIJ003555 Culex pipiens CpipJ_CPIJ003555 N 0.704
CRE20447 Caenorhabditis remanei CRE20447 N 0.831
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.732
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.704
ENSCING00000003079 Ciona intestinalis ENSCING00000003079 N 0.761
ENSCING00000016926 Ciona intestinalis ENSCING00000016926 N 0.761
ENSCSAVG00000005823 Ciona savignyi ENSCSAVG00000005823 N 0.732
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.732
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.718
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.718
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.718
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.704
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.718
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.718
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.718
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.718
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.718
estExt_fgenesh1_kg.C_1730002 Daphnia pulex estExt_fgenesh1_kg.C_1730002 N 0.718
estExt_Genewise1.C_5160046 Capitella teleta estExt_Genewise1.C_5160046 N 0.732
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.761
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.732
GA11577-RA Drosophila pseudoobscura FBgn0071628 N 0.761
GD19204 Drosophila simulans FBgn0190709 N 0.761
GE25514 Drosophila yakuba FBgn0242580 N 0.761
GF16759 Drosophila ananassae FBgn0093780 N 0.775
GG22670 Drosophila erecta FBgn0114835 N 0.761
GH15101 Drosophila grimshawi FBgn0122576 N 0.775
GI23717 Drosophila mojavensis FBgn0146442 N 0.775
GJ18756 Drosophila virilis FBgn0205908 N 0.761
GJ23276 Drosophila virilis FBgn0210378 N 0.775
GK11244 Drosophila willistoni FBgn0213255 N 0.775
GL12592 Drosophila persimilis FBgn0150198 N 0.761
GM15280 Drosophila sechellia FBgn0170200 N 0.761
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.718
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.718
LOAG_03270 Loa loa LOAG_03270 N 0.803
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.718
Minc02990 Meloidogyne incognita Minc02990 N 0.817
Minc06129 Meloidogyne incognita Minc06129 N 0.817
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.718
ncbp-2 Caenorhabditis elegans F26A3.2 N 0.831
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.718
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.718
NCBP2 Gallus gallus ENSGALG00000006843 N 0.718
NCBP2 Homo sapiens ENSG00000114503 N 0.718
NCBP2 Equus caballus ENSECAG00000016153 N 0.718
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.718
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.718
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.718
ncbp2 Danio rerio ENSDARG00000014898 N 0.761
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.704
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.718
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.718
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.718
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.718
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.718
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.718
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.718
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.761
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.718
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.718
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.718
NCBP2 Takifugu rubripes ENSTRUG00000018355 N 0.746
NCBP2 Tetraodon nigroviridis ENSTNIG00000006065 N 0.746
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.732
NCBP2L Loxodonta africana ENSLAFG00000027581 N 0.718
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.732
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.761
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.718
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.718
NCBP2_CULQU Culex quinquefasciatus CPIJ003555 N 0.704
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.789
P52299 Xenopus laevis P52299 N 0.704
PHUM535920 Pediculus humanus PHUM535920 N 0.704
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.718
Sjc_0008080 Schistosoma japonicum Sjc_0008080 N 0.746
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.803
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.718
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.718
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.746
XP_002166119.1 Hydra magnipapillata XP_002166119.1 N 0.746