gw1.9.516.1 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.9.516.1 T53413_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.9.516.1 RRM 58 127

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

99 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAG36902 Xenopus laevis AAG36902 I 0.803
AAH45063 Xenopus laevis AAH45063 I 0.803
AAH73657 Xenopus laevis AAH73657 I 0.803
AAR26262 Xenopus laevis AAR26262 I 0.803
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.789
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.789
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.789
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.831
Bm1_48895 Brugia malayi Bm1_48895 I 0.829
CBG03741 Caenorhabditis briggsae CBG03741 I 0.761
CBN00953 Caenorhabditis brenneri CBN00953 I 0.761
CBN10290 Caenorhabditis brenneri CBN10290 I 0.761
CBN16301 Caenorhabditis brenneri CBN16301 I 0.746
CJA15148 Caenorhabditis japonica CJA15148 I 0.761
CRE07990 Caenorhabditis remanei CRE07990 I 0.761
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.859
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.789
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.786
ENSCSAVG00000002001 Ciona savignyi ENSCSAVG00000002001 I 0.771
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.761
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.761
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.789
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.789
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.817
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.803
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.843
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.873
e_gw1.4.1867.1 Agaricus bisporus e_gw1.4.1867.1 N 0.000
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.929
LOAG_03634 Loa loa LOAG_03634 I 0.829
LOC100055599 Equus caballus ENSECAG00000011652 I 0.789
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.789
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.789
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.857
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.857
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.789
PABPN1 Homo sapiens ENSG00000100836 D 0.789
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.789
pabpn1 Danio rerio ENSDARG00000045373 I 0.871
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.789
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.789
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.789
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.789
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.789
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.803
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.789
PABPN1 Gallus gallus ENSGALG00000006242 I 0.000
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.789
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.789
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.857
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.789
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.857
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.775
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.789
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.789
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.789
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.831
PABPN1L Monodelphis domestica ENSMODG00000003873 N 0.000
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.000
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.704
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.704
PHUM037550 Pediculus humanus PHUM037550 I 0.817
PredSwiss_CON654.3 Pneumocystis carinii PredSwiss_CON654.3 I 0.000
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.803
Q9DDY9 Xenopus laevis Q9DDY9 I 0.803
UM02401 Ustilago maydis UM02401 N 0.718
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.829
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.817
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.814