CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DEHA0D17303g
(
Debaryomyces hansenii
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
DEHA0D17303g
T01359_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DEHA0D17303g.1
CCCH ZF
40
64
SHVPCKFYRQGVCQAGSSCPFSHNF
DEHA0D17303g.1
CCCH ZF
72
93
KLPCKYFQKGNCKFGLKCALAH
Links
Other
CCCH ZF
family RBPs
Other
Debaryomyces hansenii
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Genemark.6481_g
Agaricus bisporus
Genemark.6481_g
N
0.708
AB08315.1
Alternaria brassicicola
AB08315.1
N
0.740
ADR062W
Ashbya gossypii
ADR062W
N
0.740
orf19.7385
Candida albicans
orf19.7385
N
0.915
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.957
CLUG_02022
Candida lusitaniae
CLUG_02022
N
0.875
CPAG_02338
Candida parapsilosis
CPAG_02338
N
0.851
CTRG_02259
Candida tropicalis
CTRG_02259
N
0.837
estExt_fgenesh1_pg.C_160206
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_160206
N
0.740
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.723
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.723
EuGene12000543
Heterobasidion annosum
EuGene12000543
N
0.714
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.720
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.760
estExt_fgenesh1_kg.C_60003
Myceliophthora thermophila
estExt_fgenesh1_kg.C_60003
N
0.700
estExt_Genewise1Plus.C_chr_60126
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_60126
N
0.708
NCU05007
Neurospora crassa
NCU05007
N
0.714
estExt_Genewise1Plus.C_130028
Neurospora discreta
estExt_Genewise1Plus.C_130028
N
0.714
estExt_Genewise1.C_110035
Neurospora tetrasperma
estExt_Genewise1.C_110035
N
0.714
EAT89389.2
Phaeosphaeria nodorum
EAT89389.2
N
0.740
XP_002493509.1
Pichia pastoris
XP_002493509.1
N
0.792
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.896
PTRG_01963
Pyrenophora tritici repentis
PTRG_01963
N
0.740
25080_YPL054W
Saccharomyces bayanus
25080_YPL054W
N
0.714
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.720
22086_YPL054W
Saccharomyces mikatae
22086_YPL054W
N
0.714
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.720
SNOG_02658
Stagonospora nodorum
SNOG_02658
N
0.740
GSTUMT00003772001
Tuber melanosporum
GSTUMT00003772001
N
0.720
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.729
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.729
YALI0B12540g
Yarrowia lipolytica
YALI0B12540g
N
0.755
ZYRO0F08690g
Zygosaccharomyces rouxii
ZYRO0F08690g
N
0.706