ENSGACG00000016563 (Gasterosteus aculeatus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSGACG00000016563 T18849_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.714
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.714
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.714
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000021873 KH 93 155
ENSGACP00000021873 KH 178 242
ENSGACP00000021873 KH 269 329
ENSGACP00000021873 KH 367 434

Links

Other KH family RBPs
Other Gasterosteus aculeatus RBPs

99 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.865
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.714
Ame_R003042 Ailuropoda melanoleuca Ame_R003042 N 0.758
FUBP1 Anolis carolinensis ENSACAG00000006310 I 0.869
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.714
LOC505564 Bos taurus ENSBTAG00000021018 I 0.714
A6QP83_BOVIN Bos taurus ENSBTAG00000013072 N 0.754
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.865
LOC100399862 Callithrix jacchus ENSCJAG00000020542 N 0.762
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.714
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 0.865
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.865
FUBP3 Canis familiaris ENSCAFG00000019942 N 0.754
KHSRP Canis familiaris ENSCAFG00000018667 I 0.714
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.714
FUBP3 Cavia porcellus ENSCPOG00000010315 N 0.758
FUBP1 Cavia porcellus ENSCPOG00000002757 I 0.865
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.861
ENSDARG00000007049 Danio rerio ENSDARG00000007049 N 0.731
fubp1 Danio rerio ENSDARG00000029248 I 0.915
FUBP3 Dasypus novemcinctus ENSDNOG00000014533 N 0.738
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.865
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.710
LOC100069755 Equus caballus ENSECAG00000011500 N 0.727
LOC100065608 Equus caballus ENSECAG00000018305 I 0.714
FUBP1 Equus caballus ENSECAG00000010867 I 0.865
FUBP3 Felis catus ENSFCAG00000005113 N 0.750
KHSRP Felis catus ENSFCAG00000003731 I 0.714
Q5ZM76_CHICK Gallus gallus ENSGALG00000003941 N 0.754
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.862
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.714
FUBP3 Gorilla gorilla ENSGGOG00000011318 N 0.758
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.869
KHSRP Homo sapiens ENSG00000088247 D 0.714
FUBP3 Homo sapiens ENSG00000107164 N 0.758
FUBP1 Homo sapiens ENSG00000162613 I 0.869
FUBP3 Loxodonta africana ENSLAFG00000011611 N 0.754
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.714
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.865
FUBP3 Macaca mulatta ENSMMUG00000008249 N 0.758
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.714
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.869
FUBP3 Meleagris gallopavo ENSMGAG00000005342 N 0.754
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.861
FUBP3 Microcebus murinus ENSMICG00000015452 N 0.762
FUBP1 Microcebus murinus ENSMICG00000014463 N 0.737
KHSRP Microcebus murinus ENSMICG00000007863 I 0.705
FUBP3 Monodelphis domestica ENSMODG00000012105 N 0.742
Fubp1 Mus musculus ENSMUSG00000028034 I 0.861
Fubp3 Mus musculus ENSMUSG00000026843 N 0.750
Khsrp Mus musculus ENSMUSG00000007670 I 0.714
FUBP3 Myotis lucifugus ENSMLUG00000008743 N 0.712
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.865
FUBP3 Ochotona princeps ENSOPRG00000008648 N 0.754
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.710
FUBP1 Ochotona princeps ENSOPRG00000001175 N 0.780
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.865
FUBP3 Ornithorhynchus anatinus ENSOANG00000001042 N 0.765
FUBP1 Oryctolagus cuniculus ENSOCUG00000002225 I 0.816
FUBP3 Oryzias latipes ENSORLG00000017565 N 0.715
ENSORLG00000003540 Oryzias latipes ENSORLG00000003540 I 0.946
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.865
FUBP3 Pan troglodytes ENSPTRG00000021474 N 0.758
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.714
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.869
ENSPPYG00000019693 Pongo pygmaeus ENSPPYG00000019693 N 0.758
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.714
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.869
FUBP3 Procavia capensis ENSPCAG00000001717 N 0.735
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.865
FUBP3 Pteropus vampyrus ENSPVAG00000001510 N 0.762
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.714
FUBP1 Pteropus vampyrus ENSPVAG00000014637 N 0.707
Fubp3 Rattus norvegicus ENSRNOG00000009139 N 0.754
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.861
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.714
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.865
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.865
KHSRP Sus scrofa ENSSSCG00000013538 I 0.714
FUBP1 Taeniopygia guttata ENSTGUG00000006841 I 0.859
FUBP3 Taeniopygia guttata ENSTGUG00000004662 N 0.750
FUBP3 Takifugu rubripes ENSTRUG00000013259 N 0.715
ENSTRUG00000004615 Takifugu rubripes ENSTRUG00000004615 I 0.950
FUBP1 Tarsius syrichta ENSTSYG00000000148 I 0.865
FUBP3 Tetraodon nigroviridis ENSTNIG00000009019 N 0.700
FUBP3 Tetraodon nigroviridis ENSTNIG00000005858 N 0.723
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.714
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.865
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.865
AAI69815 Xenopus laevis AAI69815 I 0.865
AAI61696 Xenopus laevis AAI61696 I 0.714
AAH70981 Xenopus laevis AAH70981 I 0.865
AAH60400 Xenopus laevis AAH60400 N 0.742
AAH44277 Xenopus laevis AAH44277 I 0.865
AAN77160 Xenopus laevis AAN77160 I 0.710
AAN77161 Xenopus laevis AAN77161 I 0.842
AAI69923 Xenopus laevis AAI69923 I 0.710
fubp1 Xenopus tropicalis ENSXETG00000013137 I 0.884
fubp3 Xenopus tropicalis ENSXETG00000001344 N 0.750