fmr1 (Xenopus tropicalis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSXETG00000019647 T19772_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FXR1
M152_0.6 		Homo sapiens AYGACR RNAcompete
Ray et al.(2013)
RNCMPT00161 		0.777
FXR2
M020_0.6 		Homo sapiens DGACRRR RNAcompete
Ray et al.(2013)
RNCMPT00020 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000042153 KH 220 279
ENSXETP00000042153 KH 283 351
ENSXETP00000042520 KH 220 279
ENSXETP00000042520 KH 283 351

Links

Other KH family RBPs
Other Xenopus tropicalis RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.327930 Cucumis sativus Cucsa.327930 N 0.000
MDP0000193642 Malus x domestica MDP0000193642 N 0.000
MDP0000319973 Malus x domestica MDP0000319973 N 0.000
fgenesh1_pg.scaffold_18000061 Physcomitrella patens fgenesh1_pg.scaffold_18000061 N 0.000
30174.m009088 Ricinus communis 30174.m009088 N 0.000
estExt_Genewise1.C_40283 Selaginella moellendorfii estExt_Genewise1.C_40283 N 0.000
GSVIVG00010778001 Vitis vinifera GSVIVG00010778001 N 0.000