PTSG_00878 (Salpingoeca rosetta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PTSG_00878 T30256_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.806
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.790
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.748
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PTSG_00878T0 RRM 14 84
PTSG_00878T0 RRM 101 172

Links

Other RRM family RBPs
Other Salpingoeca rosetta RBPs

121 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.783
AAEL013795 Aedes aegypti AAEL013795 I 0.811
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.818
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.748
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.748
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.818
AGAP001538 Anopheles gambiae AGAP001538 I 0.811
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.804
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.713
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.720
estExt_fgenesh1_pm.C_120017 Batrachochytrium dendrobatidis estExt_fgenesh1_pm.C_120017 N 0.706
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.804
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.818
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.727
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.797
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.797
Bm1_43460 Brugia malayi Bm1_43460 I 0.755
CBN06124 Caenorhabditis brenneri CBN06124 I 0.748
CBG13349 Caenorhabditis briggsae CBG13349 I 0.727
sap-49 Caenorhabditis elegans C08B11.5 D 0.748
CJA19238 Caenorhabditis japonica CJA19238 I 0.741
CRE01639 Caenorhabditis remanei CRE01639 I 0.741
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.818
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.748
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.818
PK08238.1 Cannabis sativa PK08238.1 I 0.755
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.790
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.720
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.818
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.755
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.727
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.727
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.748
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.811
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.811
sf3b4 Danio rerio ENSDARG00000018574 D 0.818
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.790
GF20385 Drosophila ananassae FBgn0097392 I 0.790
GG19577 Drosophila erecta FBgn0111779 I 0.790
GH17589 Drosophila grimshawi FBgn0125059 I 0.797
Spx Drosophila melanogaster FBgn0015818 I 0.783
GI16317 Drosophila mojavensis FBgn0139065 I 0.797
GL21313 Drosophila persimilis FBgn0158906 I 0.797
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.797
GM12470 Drosophila sechellia FBgn0167407 I 0.783
GJ15655 Drosophila virilis FBgn0202845 I 0.797
GK19717 Drosophila willistoni FBgn0221715 I 0.790
GE16738 Drosophila yakuba FBgn0234234 I 0.790
LOC100054350 Equus caballus ENSECAG00000024737 I 0.818
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.818
SF3B4 Gallus gallus ENSGALG00000013352 I 0.818
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.818
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.741
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.734
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.818
99199 Helobdella robusta 99199 I 0.776
SF3B4 Homo sapiens ENSG00000143368 I 0.818
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.748
ISCW010601 Ixodes scapularis ISCW010601 I 0.825
LOAG_01189 Loa loa LOAG_01189 I 0.755
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.832
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.818
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.818
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.769
MDP0000131129 Malus x domestica MDP0000131129 I 0.748
MDP0000320945 Malus x domestica MDP0000320945 I 0.748
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.755
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.741
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.818
Minc01580 Meloidogyne incognita Minc01580 I 0.706
Minc12926 Meloidogyne incognita Minc12926 I 0.706
Minc02568 Meloidogyne incognita Minc02568 I 0.706
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.818
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.818
estExt_fgenesh1_pg.C_220114 Monosiga brevicollis estExt_fgenesh1_pg.C_220114 I 0.825
estExt_Genewise1Plus.C_20198 Mucor circinelloides estExt_Genewise1Plus.C_20198 I 0.706
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.818
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.818
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.804
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.783
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.818
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.769
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.818
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.734
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.734
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.818
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.727
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.720
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.727
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.818
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.818
PHUM263440 Pediculus humanus PHUM263440 I 0.790
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.727
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.741
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.811
ppa007508m Prunus persica ppa007508m I 0.734
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.818
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.818
RO3G_10200 Rhizopus oryzae RO3G_10200 I 0.713
30183.m001303 Ricinus communis 30183.m001303 I 0.741
Smp_067420 Schistosoma mansoni Smp_067420 D 0.790
SB01G020190 Sorghum bicolor Sb01g020190 I 0.734
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.786
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.762
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.776
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.776
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.818
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.818
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.818
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.818
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.818
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.769
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.818
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.818
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.762
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.755
AAH45264 Xenopus laevis AAH45264 I 0.825
AAH77458 Xenopus laevis AAH77458 I 0.825
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.818
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.734
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.727