ENSCAFG00000005753 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000005753 T35032_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.910
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.832
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.755
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000008607 RRM 13 83
ENSCAFP00000008607 RRM 99 169

Links

Other RRM family RBPs
Other Canis familiaris RBPs

117 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.804
AAEL013795 Aedes aegypti AAEL013795 I 0.825
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.923
AMAG_03157 Allomyces macrogynus AMAG_03157 I 0.713
AMAG_10429 Allomyces macrogynus AMAG_10429 I 0.713
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.762
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.762
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.923
AGAP001538 Anopheles gambiae AGAP001538 I 0.811
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.825
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.706
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.713
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.923
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.909
ENSBTAG00000026365 Bos taurus ENSBTAG00000026365 I 0.743
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.727
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.888
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.888
Bm1_43460 Brugia malayi Bm1_43460 I 0.727
CBN06124 Caenorhabditis brenneri CBN06124 I 0.755
CBG13349 Caenorhabditis briggsae CBG13349 I 0.741
sap-49 Caenorhabditis elegans C08B11.5 D 0.755
CJA19238 Caenorhabditis japonica CJA19238 I 0.741
CRE01639 Caenorhabditis remanei CRE01639 I 0.755
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.923
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.923
PK08238.1 Cannabis sativa PK08238.1 I 0.755
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.811
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.923
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.713
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.734
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.734
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.748
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.825
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.825
sf3b4 Danio rerio ENSDARG00000018574 D 0.923
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.839
GF20385 Drosophila ananassae FBgn0097392 I 0.811
GG19577 Drosophila erecta FBgn0111779 I 0.811
GH17589 Drosophila grimshawi FBgn0125059 I 0.818
Spx Drosophila melanogaster FBgn0015818 I 0.804
GI16317 Drosophila mojavensis FBgn0139065 I 0.818
GL21313 Drosophila persimilis FBgn0158906 I 0.811
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.811
GM12470 Drosophila sechellia FBgn0167407 I 0.804
GJ15655 Drosophila virilis FBgn0202845 I 0.818
GK19717 Drosophila willistoni FBgn0221715 I 0.811
GE16738 Drosophila yakuba FBgn0234234 I 0.811
LOC100054350 Equus caballus ENSECAG00000024737 I 0.923
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.923
SF3B4 Gallus gallus ENSGALG00000013352 I 0.923
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.923
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.748
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.734
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.923
99199 Helobdella robusta 99199 I 0.790
SF3B4 Homo sapiens ENSG00000143368 I 0.923
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.783
ISCW010601 Ixodes scapularis ISCW010601 I 0.860
LOAG_01189 Loa loa LOAG_01189 I 0.734
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.839
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.923
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.923
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.860
MDP0000320945 Malus x domestica MDP0000320945 I 0.748
MDP0000131129 Malus x domestica MDP0000131129 I 0.748
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.741
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.748
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.923
Minc12926 Meloidogyne incognita Minc12926 I 0.713
Minc02568 Meloidogyne incognita Minc02568 I 0.713
Minc01580 Meloidogyne incognita Minc01580 I 0.713
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.923
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.923
estExt_fgenesh1_pg.C_220114 Monosiga brevicollis estExt_fgenesh1_pg.C_220114 I 0.727
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.923
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.923
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.832
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.832
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.923
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.804
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.923
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.727
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.727
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.923
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.923
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.923
PHUM263440 Pediculus humanus PHUM263440 I 0.825
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.727
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.741
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.916
ppa007508m Prunus persica ppa007508m I 0.734
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.923
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.923
30183.m001303 Ricinus communis 30183.m001303 I 0.755
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.748
Smp_067420 Schistosoma mansoni Smp_067420 D 0.832
SB01G020190 Sorghum bicolor Sb01g020190 I 0.727
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.890
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.734
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.825
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.825
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.923
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.923
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.923
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.923
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.923
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.797
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.923
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.923
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.734
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.734
AAH45264 Xenopus laevis AAH45264 I 0.916
AAH77458 Xenopus laevis AAH77458 I 0.916
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.923
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.727
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.720