SRSF5 (Ornithorhynchus anatinus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOANG00000013336 T39551_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.721
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOANP00000021051 RRM 1 58
ENSOANP00000021051 RRM 100 165
ENSOANP00000021052 RRM 10 68
ENSOANP00000021052 RRM 110 175
ENSOANP00000021053 RRM 15 71
ENSOANP00000021053 RRM 155 220

Links

Other RRM family RBPs
Other Ornithorhynchus anatinus RBPs

106 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.000
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.938
Ame_R005284 Ailuropoda melanoleuca Ame_R005284 N 0.000
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.713
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.775
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.946
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.000
AGAP004592 Anopheles gambiae AGAP004592 I 0.000
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.000
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.000
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.713
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.938
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.713
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.713
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.752
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.000
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.000
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.705
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.938
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.713
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.938
Q9XSS6_CANFA Canis familiaris ENSCAFG00000009289 N 0.000
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.000
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.000
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.938
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.000
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.713
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.000
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.000
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.713
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.713
srsf5b Danio rerio ENSDARG00000027734 I 0.907
srsf5a Danio rerio ENSDARG00000029818 I 0.767
srsf6a Danio rerio ENSDARG00000013729 I 0.000
srsf6b Danio rerio ENSDARG00000016783 I 0.000
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.705
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.705
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.713
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.705
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.713
GF17608 Drosophila ananassae FBgn0094626 I 0.721
GH18528 Drosophila grimshawi FBgn0125995 I 0.713
B52 Drosophila melanogaster FBgn0004587 D 0.721
GI22065 Drosophila mojavensis FBgn0144794 I 0.713
GL23543 Drosophila persimilis FBgn0161133 I 0.713
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.713
GJ24113 Drosophila virilis FBgn0211197 I 0.713
GK13948 Drosophila willistoni FBgn0215954 I 0.721
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.000
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.930
LOC100053264 Equus caballus ENSECAG00000026873 I 0.938
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.713
SRSF5 Felis catus ENSFCAG00000008848 I 0.938
SRSF6 Gallus gallus ENSGALG00000000990 N 0.000
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.713
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.713
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.705
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.938
SRSF4 Gorilla gorilla ENSGGOG00000002444 N 0.000
SRSF4 Homo sapiens ENSG00000116350 I 0.713
SRSF5 Homo sapiens ENSG00000100650 D 0.938
SRSF6 Homo sapiens ENSG00000124193 I 0.705
ISCW010321 Ixodes scapularis ISCW010321 I 0.000
ISCW010322 Ixodes scapularis ISCW010322 I 0.000
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.721
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.713
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.930
SRSF6 Macaca mulatta ENSMMUG00000006742 N 0.000
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.713
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.938
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.000
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.713
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.000
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.946
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.000
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.713
Srsf6 Mus musculus ENSMUSG00000016921 I 0.705
Srsf5 Mus musculus ENSMUSG00000021134 I 0.938
Srsf4 Mus musculus ENSMUSG00000028911 I 0.713
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.938
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.000
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.938
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.705
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.713
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.938
SRSF6_RABIT Oryctolagus cuniculus ENSOCUG00000009785 N 0.000
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.713
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.000
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.938
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.938
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.713
PHUM290500 Pediculus humanus PHUM290500 I 0.000
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.713
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.938
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.705
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.713
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.000
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.705
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.713
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.705
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.938
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.744
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.744
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.713
SRSF6 Sus scrofa ENSSSCG00000007362 N 0.000
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.938
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.705
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.946
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.899
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.705
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.000
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.705
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.938
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.899
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.705
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.000
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.705
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.938
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.713
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.938
AAH44265 Xenopus laevis AAH44265 I 0.000
AAH44085 Xenopus laevis AAH44085 I 0.744
AAH46668 Xenopus laevis AAH46668 I 0.000
AAH71160 Xenopus laevis AAH71160 I 0.752
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.930
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.752
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.000
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.000