CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TIAL1
(
Oryctolagus cuniculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOCUG00000003783
T39622_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
TIA1
M156_0.6
Homo sapiens
WUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00165
0.888
TIA1
M075_0.6
Homo sapiens
UUUUUBK
RNAcompete
Ray et al.(2013)
RNCMPT00077
0.888
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000003279
RRM
11
78
YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK
ENSOCUP00000003279
RRM
98
168
VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR
ENSOCUP00000003279
RRM
206
270
VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK
ENSOCUP00000017999
RRM
1
45
YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGF
ENSOCUP00000017999
RRM
38
85
RVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK
ENSOCUP00000017999
RRM
105
175
VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR
ENSOCUP00000017999
RRM
213
277
VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK
Links
Other
RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
85 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL002308
Aedes aegypti
AAEL002308
I
0.000
Ame_R000168
Ailuropoda melanoleuca
Ame_R000168
I
0.000
Ame_R004924
Ailuropoda melanoleuca
Ame_R004924
I
0.000
AMAG_06814
Allomyces macrogynus
AMAG_06814
N
0.000
AMAG_15989
Allomyces macrogynus
AMAG_15989
N
0.000
Aqu1.221345
Amphimedon queenslandica
Aqu1.221345
I
0.000
ZFP36L2
Anolis carolinensis
ENSACAG00000014740
I
0.000
ENSACAG00000005547
Anolis carolinensis
ENSACAG00000005547
I
0.000
AGAP010954
Anopheles gambiae
AGAP010954
N
0.000
amel4_ncbi_hmm10964
Apis mellifera
amel4_ncbi_hmm10964
I
0.000
BGIBMGA008337
Bombyx mori
BGIBMGA008337
I
0.000
A7MB98_BOVIN
Bos taurus
ENSBTAG00000025434
I
0.000
Q1JP65_BOVIN
Bos taurus
ENSBTAG00000003553
I
0.000
estExt_fgenesh2_pg.C_680108
Branchiostoma floridae
estExt_fgenesh2_pg.C_680108
I
0.000
LOC100405281
Callithrix jacchus
ENSCJAG00000015116
I
0.000
LOC100386590
Callithrix jacchus
ENSCJAG00000014571
I
0.000
ZFP36L2
Canis familiaris
ENSCAFG00000002438
I
0.000
ZFP36L1
Canis familiaris
ENSCAFG00000016497
I
0.000
gw1.534.24.1
Capitella teleta
gw1.534.24.1
I
0.000
ZFP36L2
Cavia porcellus
ENSCPOG00000022038
I
0.000
ZFP36L1
Cavia porcellus
ENSCPOG00000025078
I
0.000
Q4H2G7_CIOIN
Ciona intestinalis
ENSCING00000014446
I
0.000
ENSCSAVG00000002923
Ciona savignyi
ENSCSAVG00000002923
I
0.000
CpipJ_CPIJ018734
Culex pipiens
CpipJ_CPIJ018734
I
0.000
CPIJ018734
Culex quinquefasciatus
CPIJ018734
I
0.000
ZFP36
Danio rerio
ENSDARG00000044395
I
0.000
zgc:114130
Danio rerio
ENSDARG00000040725
I
0.000
zfp36l1a
Danio rerio
ENSDARG00000016154
I
0.000
zfp36l1b
Danio rerio
ENSDARG00000021443
I
0.000
zfp36l2
Danio rerio
ENSDARG00000021806
I
0.000
CABZ01070258.1
Danio rerio
ENSDARG00000040503
I
0.000
gw1.42.93.1
Daphnia pulex
gw1.42.93.1
N
0.000
ZFP36L1
Dasypus novemcinctus
ENSDNOG00000005159
I
0.000
estExt_fgeneshDP_kg.C_230001
Dictyostelium purpureum
estExt_fgeneshDP_kg.C_230001
I
0.000
Zfp36l1
Dipodomys ordii
ENSDORG00000008348
I
0.000
GF21384
Drosophila ananassae
FBgn0098386
N
0.000
GG17735
Drosophila erecta
FBgn0109957
N
0.000
GH17894
Drosophila grimshawi
FBgn0125362
N
0.000
Tis11
Drosophila melanogaster
FBgn0011837
N
0.000
GI21684
Drosophila mojavensis
FBgn0144414
N
0.000
GL13141
Drosophila persimilis
FBgn0150747
N
0.000
GA17935-RA
Drosophila pseudoobscura
FBgn0077944
N
0.000
GJ15863
Drosophila virilis
FBgn0203050
N
0.000
GK25600
Drosophila willistoni
FBgn0227559
N
0.000
GE17025
Drosophila yakuba
FBgn0234511
N
0.000
LOC100063597
Equus caballus
ENSECAG00000018860
I
0.000
ZFP36L2
Felis catus
ENSFCAG00000013462
N
0.000
ZFP36L1
Gasterosteus aculeatus
ENSGACG00000011271
I
0.000
ENSGACG00000013400
Gasterosteus aculeatus
ENSGACG00000013400
I
0.000
ZFP36
Gasterosteus aculeatus
ENSGACG00000008344
I
0.000
ENSGACG00000008351
Gasterosteus aculeatus
ENSGACG00000008351
I
0.000
ZFP36L2
Gorilla gorilla
ENSGGOG00000001402
I
0.000
138584
Helobdella robusta
138584
N
0.000
64152
Helobdella robusta
64152
N
0.000
153596
Helobdella robusta
153596
N
0.000
ZFP36L1
Homo sapiens
ENSG00000185650
I
0.000
ZFP36L2
Homo sapiens
ENSG00000152518
I
0.000
XP_002159721.1
Hydra magnipapillata
XP_002159721.1
N
0.000
gw1.30.59.1
Lottia gigantea
gw1.30.59.1
N
0.000
ZFP36L2
Loxodonta africana
ENSLAFG00000004265
I
0.000
ZFP36L1
Loxodonta africana
ENSLAFG00000028594
I
0.000
ZFP36L1
Macropus eugenii
ENSMEUG00000003070
I
0.000
ZFP36L2
Macropus eugenii
ENSMEUG00000010649
I
0.000
ZFP36L2
Microcebus murinus
ENSMICG00000010318
I
0.000
ZFP36L2
Monodelphis domestica
ENSMODG00000000407
I
0.000
fgenesh2_pg.scaffold_13000206
Monosiga brevicollis
fgenesh2_pg.scaffold_13000206
N
0.000
Zfp36l1
Mus musculus
ENSMUSG00000021127
I
0.000
Zfp36l2
Mus musculus
ENSMUSG00000045817
I
0.000
Zfp36l3
Mus musculus
ENSMUSG00000059334
I
0.000
ZFP36L2
Myotis lucifugus
ENSMLUG00000015588
I
0.000
nasonia_NCBI_hmm9264
Nasonia vitripennis
nasonia_NCBI_hmm9264
I
0.000
e_gw.346.37.1
Nematostella vectensis
e_gw.346.37.1
I
0.000
ZFP36L2
Ornithorhynchus anatinus
ENSOANG00000002848
I
0.000
ZFP36L1
Oryctolagus cuniculus
ENSOCUG00000003168
I
0.000
ENSORLG00000008378
Oryzias latipes
ENSORLG00000008378
I
0.000
ZFP36L1
Oryzias latipes
ENSORLG00000011106
I
0.000
ENSORLG00000000589
Oryzias latipes
ENSORLG00000000589
I
0.000
ZFP36L1
Otolemur garnettii
ENSOGAG00000010033
N
0.000
ZFP36L2
Pan troglodytes
ENSPTRG00000011870
I
0.000
XR_022888.1
Pan troglodytes
ENSPTRG00000030712
I
0.000
EFA80829.1
Polysphondylium pallidum
EFA80829.1
I
0.000
ENSPPYG00000005933
Pongo pygmaeus
ENSPPYG00000005933
I
0.000
ENSPPYG00000012458
Pongo pygmaeus
ENSPPYG00000012458
I
0.000
ZFP36L1
Procavia capensis
ENSPCAG00000005383
I
0.000
ZFP36L2
Procavia capensis
ENSPCAG00000010765
I
0.000
ZFP36L1
Pteropus vampyrus
ENSPVAG00000011686
I
0.000
Zfp36l2
Rattus norvegicus
ENSRNOG00000005067
I
0.000
TISB_RAT
Rattus norvegicus
ENSRNOG00000030024
I
0.000
Zfp36l3
Rattus norvegicus
ENSRNOG00000029788
I
0.000
PTSG_01604
Salpingoeca rosetta
PTSG_01604
N
0.000
ZFP36L1
Spermophilus tridecemlineatus
ENSSTOG00000009758
I
0.000
XP_001175665.1
Strongylocentrotus purpuratus
XP_001175665.1
I
0.000
XP_001175810.1
Strongylocentrotus purpuratus
XP_001175810.1
I
0.000
XP_001178437.1
Strongylocentrotus purpuratus
XP_001178437.1
I
0.000
XP_782811.1
Strongylocentrotus purpuratus
XP_782811.1
I
0.000
ENSSSCG00000008460
Sus scrofa
ENSSSCG00000008460
I
0.000
ZFP36L2
Sus scrofa
ENSSSCG00000008461
I
0.000
ZFP36L1
Sus scrofa
ENSSSCG00000002302
I
0.000
ZFP36L1
Taeniopygia guttata
ENSTGUG00000011494
I
0.000
ZFP36L1
Takifugu rubripes
ENSTRUG00000012295
I
0.000
ZFP36L2
Takifugu rubripes
ENSTRUG00000006923
I
0.000
ZFP36
Takifugu rubripes
ENSTRUG00000002023
I
0.000
ENSTRUG00000003178
Takifugu rubripes
ENSTRUG00000003178
I
0.000
ZFP36L1
Tarsius syrichta
ENSTSYG00000009284
I
0.000
ZFP36L2
Tetraodon nigroviridis
ENSTNIG00000017103
I
0.000
ZFP36L1
Tetraodon nigroviridis
ENSTNIG00000002277
I
0.000
ENSTNIG00000019802
Tetraodon nigroviridis
ENSTNIG00000019802
I
0.000
ZFP36
Tetraodon nigroviridis
ENSTNIG00000000183
I
0.000
e_gw1.40.110.1
Trichoplax adhaerens
e_gw1.40.110.1
I
0.000
ZFP36L2
Tupaia belangeri
ENSTBEG00000012370
I
0.000
ZFP36L1
Tursiops truncatus
ENSTTRG00000003475
I
0.000
ZFP36L2
Tursiops truncatus
ENSTTRG00000006356
I
0.000
AAH84221
Xenopus laevis
AAH84221
I
0.000
AAI00163
Xenopus laevis
AAI00163
I
0.000
Q7ZXW9
Xenopus laevis
Q7ZXW9
I
0.000
BAC54909
Xenopus laevis
BAC54909
I
0.000
AAH84197
Xenopus laevis
AAH84197
I
0.000
AAH44086
Xenopus laevis
AAH44086
I
0.000
AAD24209
Xenopus laevis
AAD24209
I
0.000
AAD24208
Xenopus laevis
AAD24208
I
0.000
Q805B4
Xenopus laevis
Q805B4
I
0.000
zfp36l2
Xenopus tropicalis
ENSXETG00000009274
I
0.000
zfp36l1
Xenopus tropicalis
ENSXETG00000016987
I
0.000