CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
HNRNPM
(
Oryzias latipes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSORLG00000005400
T40131_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000006803
RRM
36
106
VVVSNIPYDVKWQTLKDLMKEKVGEVTYVEHLMDAEGKSRGCAVVEFRTDELMKKAVEKVNRHVLNGRPLK
ENSORLP00000006803
RRM
130
199
VFVANLDYKVGWKKLKEVFGMAGMVVRTDILEDKDGKSRGMGTVTFEMPIEAVQAVSMFNGQLLFNRTMH
ENSORLP00000006803
RRM
535
603
IFVRNLPFDFTWKNLKDTFNTCGMVQYADIKMENGKSKGCGVVRFDSPETAERACRTMNGYRLNGREID
Links
Other
RRM
family RBPs
Other
Oryzias latipes
RBPs
70 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCSAVG00000001363
Ciona savignyi
ENSCSAVG00000001363
N
0.000