XM_002886132.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.3__3460__AT2G18510.1 T44527_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.881
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.743
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.713
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__3460__AT2G18510.1 RRM 27 97
fgenesh2_kg.3__3460__AT2G18510.1 RRM 114 185

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.734
AAEL013795 Aedes aegypti AAEL013795 I 0.741
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.755
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.755
AGAP001538 Anopheles gambiae AGAP001538 I 0.727
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.727
XM_002883791.1 Arabidopsis lyrata Al_scaffold_0003_3307 I 0.804
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.979
59062 Aureococcus anophagefferens 59062 I 0.713
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.755
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.741
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.846
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.748
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.748
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.755
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.706
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.755
PK08238.1 Cannabis sativa PK08238.1 I 0.916
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.720
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.706
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.755
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.839
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.790
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.811
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.811
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.923
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.741
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.741
sf3b4 Danio rerio ENSDARG00000018574 D 0.755
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.748
GF20385 Drosophila ananassae FBgn0097392 I 0.727
GG19577 Drosophila erecta FBgn0111779 I 0.727
GH17589 Drosophila grimshawi FBgn0125059 I 0.734
Spx Drosophila melanogaster FBgn0015818 I 0.720
GI16317 Drosophila mojavensis FBgn0139065 I 0.734
GL21313 Drosophila persimilis FBgn0158906 I 0.727
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.727
GM12470 Drosophila sechellia FBgn0167407 I 0.720
GJ15655 Drosophila virilis FBgn0202845 I 0.734
GK19717 Drosophila willistoni FBgn0221715 I 0.727
GE16738 Drosophila yakuba FBgn0234234 I 0.727
LOC100054350 Equus caballus ENSECAG00000024737 I 0.755
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.755
SF3B4 Gallus gallus ENSGALG00000013352 I 0.755
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.755
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.902
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.888
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.755
99199 Helobdella robusta 99199 I 0.713
SF3B4 Homo sapiens ENSG00000143368 I 0.755
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.769
ISCW010601 Ixodes scapularis ISCW010601 I 0.755
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.762
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.755
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.755
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.706
MDP0000131129 Malus x domestica MDP0000131129 I 0.909
MDP0000320945 Malus x domestica MDP0000320945 I 0.909
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.902
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.902
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.755
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.755
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.776
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.755
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.755
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.755
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.741
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.755
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.755
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.741
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.755
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.860
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.860
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.755
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.762
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.762
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.769
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.755
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.755
PHUM263440 Pediculus humanus PHUM263440 I 0.720
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.881
estExt_Genewise1Plus.C_00387 Phytophthora capsici estExt_Genewise1Plus.C_00387 N 0.706
s_462942 Phytophthora sojae s_462942 N 0.706
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.902
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.748
ppa007508m Prunus persica ppa007508m I 0.895
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.755
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.755
RO3G_15452 Rhizopus oryzae RO3G_15452 I 0.706
RO3G_10200 Rhizopus oryzae RO3G_10200 I 0.706
30183.m001303 Ricinus communis 30183.m001303 I 0.881
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.713
Smp_067420 Schistosoma mansoni Smp_067420 D 0.713
SB01G020190 Sorghum bicolor Sb01g020190 I 0.860
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.731
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.755
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.727
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.727
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.755
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.755
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.755
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.755
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.755
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.720
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.755
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.755
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.895
AAH45264 Xenopus laevis AAH45264 I 0.762
AAH77458 Xenopus laevis AAH77458 I 0.762
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.755
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.853
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.853