LOC_Os04g53440 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os04g53440 T45031_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os04g53440.1 RRM 92 162
LOC_Os04g53440.1 RRM 182 253
LOC_Os04g53440.1 RRM 286 334
LOC_Os04g53440.2 RRM 92 162
LOC_Os04g53440.2 RRM 182 253
LOC_Os04g53440.2 RRM 286 350

Links

Other RRM family RBPs
Other Oryza sativa RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R012465 Ailuropoda melanoleuca Ame_R012465 I 0.000
SRSF7 Anolis carolinensis ENSACAG00000006082 I 0.000
amel4_ncbi_hmm42637 Apis mellifera amel4_ncbi_hmm42637 I 0.000
BGIBMGA010396 Bombyx mori BGIBMGA010396 I 0.000
SFRS7_BOVIN Bos taurus ENSBTAG00000014891 I 0.000
e_gw.267.117.1 Branchiostoma floridae e_gw.267.117.1 I 0.000
fgenesh2_pg.scaffold_208000073 Branchiostoma floridae fgenesh2_pg.scaffold_208000073 I 0.000
LOC100385878 Callithrix jacchus ENSCJAG00000015185 I 0.000
ENSCAFG00000006272 Canis familiaris ENSCAFG00000006272 I 0.000
estExt_Genewise1.C_1590063 Capitella teleta estExt_Genewise1.C_1590063 I 0.000
SRSF7 Cavia porcellus ENSCPOG00000011785 I 0.000
CpipJ_CPIJ013237 Culex pipiens CpipJ_CPIJ013237 I 0.000
CPIJ013237 Culex quinquefasciatus CPIJ013237 I 0.000
SRSF7 Danio rerio ENSDARG00000035325 I 0.000
SRSF7 Dasypus novemcinctus ENSDNOG00000007821 I 0.000
Srsf7 Dipodomys ordii ENSDORG00000008616 I 0.000
LOC100054033 Equus caballus ENSECAG00000008664 I 0.000
SRSF7 Erinaceus europaeus ENSEEUG00000014487 I 0.000
SRSF7 Gorilla gorilla ENSGGOG00000014620 I 0.000
SRSF7 Homo sapiens ENSG00000115875 D 0.000
gw1.10.611.1 Lottia gigantea gw1.10.611.1 I 0.000
SRSF7 Loxodonta africana ENSLAFG00000005666 I 0.000
SRSF7 Macaca mulatta ENSMMUG00000011025 I 0.000
ENSMEUG00000016459 Macropus eugenii ENSMEUG00000016459 I 0.000
SRSF7 Meleagris gallopavo ENSMGAG00000007415 I 0.000
ENSMODG00000008669 Monodelphis domestica ENSMODG00000008669 I 0.000
Srsf7 Mus musculus ENSMUSG00000024097 I 0.000
SRSF7 Myotis lucifugus ENSMLUG00000015692 I 0.000
SRSF7 Ochotona princeps ENSOPRG00000010234 I 0.000
SRSF7 Ornithorhynchus anatinus ENSOANG00000004405 I 0.000
SRSF7 Oryctolagus cuniculus ENSOCUG00000004087 I 0.000
SRSF7 Otolemur garnettii ENSOGAG00000010169 I 0.000
SRSF7 Pan troglodytes ENSPTRG00000011851 I 0.000
PHUM241330 Pediculus humanus PHUM241330 I 0.000
ENSPPYG00000012480 Pongo pygmaeus ENSPPYG00000012480 I 0.000
SRSF7 Procavia capensis ENSPCAG00000011348 I 0.000
SRSF7 Pteropus vampyrus ENSPVAG00000012076 I 0.000
Sfrs7 Rattus norvegicus ENSRNOG00000027360 I 0.000
Sjc_0048080 Schistosoma japonicum Sjc_0048080 N 0.000
Smp_098890 Schistosoma mansoni Smp_098890 I 0.000
SRSF7 Sus scrofa ENSSSCG00000008484 I 0.000
SRSF7 Tarsius syrichta ENSTSYG00000012273 I 0.000
SRSF7 Tupaia belangeri ENSTBEG00000004604 I 0.000
SRSF7 Vicugna pacos ENSVPAG00000003316 I 0.000
AAH77185 Xenopus laevis AAH77185 I 0.000
AAH77393 Xenopus laevis AAH77393 I 0.000
srsf7 Xenopus tropicalis ENSXETG00000025300 I 0.000