PK10695.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK10695.1 T31668_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PK10695.1 RRM 112 180
PK10695.1 RRM 204 275
PK10695.1 RRM 313 377

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.859
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.854
MDP0000294628 Malus x domestica MDP0000294628 I 0.854
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.854
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.850
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.850
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.845
ppa006617m Prunus persica ppa006617m N 0.840
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.835
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.816
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.811
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.803
29842.m003612 Ricinus communis 29842.m003612 N 0.793
mgf014417m Mimulus guttatus mgf014417m N 0.784
mgf010468m Mimulus guttatus mgf010468m I 0.779
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.774
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.774
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.774
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.774
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.774
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.774
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.769
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.764
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.764
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.740
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.740
29666.m001436 Ricinus communis 29666.m001436 I 0.740
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.740
MDP0000614064 Malus x domestica MDP0000614064 N 0.731
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.731
ppa006577m Prunus persica ppa006577m I 0.731
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.726
MDP0000223369 Malus x domestica MDP0000223369 N 0.721
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.721
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.716
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.712
SB06G029180 Sorghum bicolor Sb06g029180 N 0.712
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.712
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.712
SB01G016170 Sorghum bicolor Sb01g016170 N 0.710
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.707
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.707
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.705
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.705
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.705
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.702
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.700
PK15272.1 Cannabis sativa PK15272.1 I 0.700
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.700