Cucsa.085920 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.085920 T49543_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.085920.1 RRM 132 200
Cucsa.085920.1 RRM 223 294
Cucsa.085920.1 RRM 331 395

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.961
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.864
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.864
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.854
PK10695.1 Cannabis sativa PK10695.1 I 0.854
MDP0000294628 Malus x domestica MDP0000294628 I 0.854
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.854
ppa006617m Prunus persica ppa006617m N 0.840
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.840
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.820
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.811
29842.m003612 Ricinus communis 29842.m003612 N 0.808
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.793
mgf010468m Mimulus guttatus mgf010468m I 0.793
mgf014417m Mimulus guttatus mgf014417m N 0.779
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.769
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.769
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.769
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.769
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.769
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.764
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.764
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.764
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.760
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.760
29666.m001436 Ricinus communis 29666.m001436 I 0.750
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.745
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.745
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.740
ppa006577m Prunus persica ppa006577m I 0.736
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.736
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.736
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.731
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.731
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.729
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.729
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.729
MDP0000614064 Malus x domestica MDP0000614064 N 0.726
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.725
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.725
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.721
MDP0000223369 Malus x domestica MDP0000223369 N 0.721
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.721
SB06G029180 Sorghum bicolor Sb06g029180 N 0.721
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.716
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.716
SB01G016170 Sorghum bicolor Sb01g016170 N 0.715
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.715
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.712
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.710
ppa005661m Prunus persica ppa005661m I 0.710
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.710
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.707
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.707
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.705
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.705
29801.m003218 Ricinus communis 29801.m003218 I 0.705
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.702
30169.m006434 Ricinus communis 30169.m006434 I 0.702
30170.m014217 Ricinus communis 30170.m014217 I 0.700