chr4.CM1334.150.nc (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr4.CM1334.150.nc T55888_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM1334.150.nc RRM 74 141
chr4.CM1334.150.nc RRM 168 239
chr4.CM1334.150.nc RRM 277 341

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.907
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.902
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.902
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.893
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.893
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.878
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.820
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.811
PK10695.1 Cannabis sativa PK10695.1 I 0.811
MDP0000294628 Malus x domestica MDP0000294628 I 0.811
ppa006617m Prunus persica ppa006617m N 0.801
29842.m003612 Ricinus communis 29842.m003612 N 0.792
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.773
mgf010468m Mimulus guttatus mgf010468m I 0.755
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.749
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.749
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.744
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.744
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.739
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.739
mgf014417m Mimulus guttatus mgf014417m N 0.736
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.736
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.736
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.736
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.736
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.736
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.736
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.734
MDP0000223369 Malus x domestica MDP0000223369 N 0.726
MDP0000614064 Malus x domestica MDP0000614064 N 0.721
ppa006577m Prunus persica ppa006577m I 0.721
29666.m001436 Ricinus communis 29666.m001436 I 0.716
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.716
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.712
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.707
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.702
SB06G029180 Sorghum bicolor Sb06g029180 N 0.702
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.702