mgf010468m (Mimulus guttatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 mgf010468m T53683_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
mgf010468m RRM 81 151
mgf010468m RRM 174 245
mgf010468m RRM 284 348

Links

Other RRM family RBPs
Other Mimulus guttatus RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.803
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.798
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.798
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.798
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.793
MDP0000614064 Malus x domestica MDP0000614064 N 0.793
mgf014417m Mimulus guttatus mgf014417m N 0.788
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.784
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.784
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.784
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.784
ppa006577m Prunus persica ppa006577m I 0.784
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.784
MDP0000223369 Malus x domestica MDP0000223369 N 0.779
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.779
MDP0000294628 Malus x domestica MDP0000294628 I 0.779
PK10695.1 Cannabis sativa PK10695.1 I 0.779
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.774
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.769
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.764
ppa006617m Prunus persica ppa006617m N 0.764
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.760
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.755
29666.m001436 Ricinus communis 29666.m001436 I 0.755
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.755
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.750
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.750
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.750
29842.m003612 Ricinus communis 29842.m003612 N 0.745
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.745
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.745
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.740
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.740
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.740
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.736
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.736
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.736
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.736
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.731
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.726
SB06G029180 Sorghum bicolor Sb06g029180 N 0.721
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.721
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.721
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.721
SB01G016170 Sorghum bicolor Sb01g016170 N 0.716
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.712
30170.m014217 Ricinus communis 30170.m014217 I 0.712
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.712
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.712
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.707
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.707
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.702
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.702
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.702
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.702