Cucsa.085910 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.085910 T49542_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.085910.1 RRM 69 137
Cucsa.085910.1 RRM 160 231
Cucsa.085910.1 RRM 262 326

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.961
MDP0000294628 Malus x domestica MDP0000294628 I 0.864
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.864
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.859
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.859
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.859
PK10695.1 Cannabis sativa PK10695.1 I 0.845
ppa006617m Prunus persica ppa006617m N 0.835
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.835
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.830
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.820
29842.m003612 Ricinus communis 29842.m003612 N 0.803
mgf010468m Mimulus guttatus mgf010468m I 0.798
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.793
mgf014417m Mimulus guttatus mgf014417m N 0.774
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.769
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.769
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.769
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.769
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.769
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.769
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.769
29666.m001436 Ricinus communis 29666.m001436 I 0.760
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.760
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.750
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.750
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.750
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.750
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.745
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.745
ppa006577m Prunus persica ppa006577m I 0.745
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.740
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.734
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.731
MDP0000614064 Malus x domestica MDP0000614064 N 0.731
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.731
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.731
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.731
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.729
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.729
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.729
MDP0000223369 Malus x domestica MDP0000223369 N 0.726
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.725
SB06G029180 Sorghum bicolor Sb06g029180 N 0.721
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.721
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.721
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.716
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.716
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.716
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.715
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.715
SB01G016170 Sorghum bicolor Sb01g016170 N 0.715
30169.m006434 Ricinus communis 30169.m006434 I 0.712
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.712
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.710
ppa005661m Prunus persica ppa005661m I 0.710
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.710
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.707
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.705
PK15272.1 Cannabis sativa PK15272.1 I 0.705
SB01G045570 Sorghum bicolor Sb01g045570 I 0.702
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.700
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.700
30170.m014217 Ricinus communis 30170.m014217 I 0.700
ppa005903m Prunus persica ppa005903m I 0.700
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.700