LOC_Os04g53440 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os04g53440 T45031_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os04g53440.1 RRM 92 162
LOC_Os04g53440.1 RRM 182 253
LOC_Os04g53440.1 RRM 286 334
LOC_Os04g53440.2 RRM 92 162
LOC_Os04g53440.2 RRM 182 253
LOC_Os04g53440.2 RRM 286 350

Links

Other RRM family RBPs
Other Oryza sativa RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 1.000
SB06G029180 Sorghum bicolor Sb06g029180 N 0.889
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.885
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.880
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.870
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.861
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.861
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.856
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.736
mgf010468m Mimulus guttatus mgf010468m I 0.736
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.736
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.731
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.731
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.731
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.721
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.721
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.716
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.716
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.716
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.716
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.716
PK10695.1 Cannabis sativa PK10695.1 I 0.712
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.707
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.702
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.702
ppa006577m Prunus persica ppa006577m I 0.702