Glyma17g01800.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma17g01800.1 T52888_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma17g01800.1 RRM 67 134
Glyma17g01800.1 RRM 160 231
Glyma17g01800.1 RRM 267 331

Links

Other RRM family RBPs
Other Glycine max RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.976
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.951
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.941
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.917
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.907
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.878
MDP0000294628 Malus x domestica MDP0000294628 I 0.864
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.859
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.854
ppa006617m Prunus persica ppa006617m N 0.854
PK10695.1 Cannabis sativa PK10695.1 I 0.850
29842.m003612 Ricinus communis 29842.m003612 N 0.821
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.816
mgf010468m Mimulus guttatus mgf010468m I 0.798
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.787
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.787
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.787
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.783
mgf014417m Mimulus guttatus mgf014417m N 0.779
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.774
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.774
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.774
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.774
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.774
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.763
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.760
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.758
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.754
ppa006577m Prunus persica ppa006577m I 0.750
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.750
29666.m001436 Ricinus communis 29666.m001436 I 0.750
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.739
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.739
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.736
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.731
MDP0000223369 Malus x domestica MDP0000223369 N 0.731
MDP0000614064 Malus x domestica MDP0000614064 N 0.731
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.731
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.729
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.726
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.725
SB06G029180 Sorghum bicolor Sb06g029180 N 0.721
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.716
ppa005903m Prunus persica ppa005903m I 0.715
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.715
SB01G045570 Sorghum bicolor Sb01g045570 I 0.712
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.710
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.710
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.707
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.705
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.705
MDP0000200455 Malus x domestica MDP0000200455 I 0.705
MDP0000136330 Malus x domestica MDP0000136330 I 0.705
30170.m014217 Ricinus communis 30170.m014217 I 0.705
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.705
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.705
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.702
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.702