BGIOSIBSE038779 (Oryza indica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIOSIBSE038779 T33109_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBSE038779 RRM 100 169
BGIOSIBSE038779 RRM 190 261
BGIOSIBSE038779 RRM 294 358

Links

Other RRM family RBPs
Other Oryza indica RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.995
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.880
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.879
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.870
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.861
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.861
SB06G029180 Sorghum bicolor Sb06g029180 N 0.837
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.837
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.763
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.758
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.754
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.750
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.749
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.744
mgf010468m Mimulus guttatus mgf010468m I 0.740
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.740
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.739
29842.m003612 Ricinus communis 29842.m003612 N 0.739
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.731
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.731
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.731
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.731
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.731
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.729
MDP0000614064 Malus x domestica MDP0000614064 N 0.726
PK10695.1 Cannabis sativa PK10695.1 I 0.726
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.725
MDP0000223369 Malus x domestica MDP0000223369 N 0.721
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.721
ppa006577m Prunus persica ppa006577m I 0.716
SB01G016170 Sorghum bicolor Sb01g016170 N 0.715
MDP0000294628 Malus x domestica MDP0000294628 I 0.707
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.707
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.707
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.705
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.705
PDK_20s1343381g001 Phoenix dactylifera PDK_20s1343381g001 N 0.705