Glyma15g11380.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma15g11380.1 T52860_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma15g11380.1 RRM 69 136
Glyma15g11380.1 RRM 163 234
Glyma15g11380.1 RRM 272 336

Links

Other RRM family RBPs
Other Glycine max RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.985
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.941
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.941
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.937
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.893
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.888
MDP0000294628 Malus x domestica MDP0000294628 I 0.864
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.864
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.864
PK10695.1 Cannabis sativa PK10695.1 I 0.854
ppa006617m Prunus persica ppa006617m N 0.835
29842.m003612 Ricinus communis 29842.m003612 N 0.812
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.802
mgf010468m Mimulus guttatus mgf010468m I 0.798
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.792
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.787
mgf014417m Mimulus guttatus mgf014417m N 0.784
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.779
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.779
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.779
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.779
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.779
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.778
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.778
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.758
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.755
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.750
MDP0000614064 Malus x domestica MDP0000614064 N 0.750
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.750
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.749
ppa006577m Prunus persica ppa006577m I 0.745
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.744
MDP0000223369 Malus x domestica MDP0000223369 N 0.740
29666.m001436 Ricinus communis 29666.m001436 I 0.740
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.731
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.731
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.725
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.725
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.721
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.721
SB01G045570 Sorghum bicolor Sb01g045570 I 0.716
SB06G029180 Sorghum bicolor Sb06g029180 N 0.716
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.715
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.715
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.712
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.710
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.707
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.705
ppa005903m Prunus persica ppa005903m I 0.705
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.705
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.702
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.702
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.700
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.700
30170.m014217 Ricinus communis 30170.m014217 I 0.700