cassava37000.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava37000.valid.m1 T49349_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.731
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava37000.valid.m1 RRM 77 147
cassava37000.valid.m1 RRM 170 241
cassava37000.valid.m1 RRM 277 341

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 1.000
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 1.000
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 1.000
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 1.000
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.938
29666.m001436 Ricinus communis 29666.m001436 I 0.894
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.880
MDP0000614064 Malus x domestica MDP0000614064 N 0.827
ppa006577m Prunus persica ppa006577m I 0.827
MDP0000223369 Malus x domestica MDP0000223369 N 0.822
mgf010468m Mimulus guttatus mgf010468m I 0.784
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.784
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.779
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.779
PK10695.1 Cannabis sativa PK10695.1 I 0.774
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.774
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.774
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.769
mgf014417m Mimulus guttatus mgf014417m N 0.769
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.769
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.764
MDP0000294628 Malus x domestica MDP0000294628 I 0.764
29842.m003612 Ricinus communis 29842.m003612 N 0.760
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.760
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.745
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.745
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.736
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.736
ppa006617m Prunus persica ppa006617m N 0.736
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.736
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.731
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.731
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.731
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.726
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.726
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.726
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.726
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.726
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.726
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.726
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.721
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.716
SB01G016170 Sorghum bicolor Sb01g016170 N 0.716
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.716
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.716
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.716
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.712
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.712
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.712
29801.m003218 Ricinus communis 29801.m003218 I 0.707
SB06G029180 Sorghum bicolor Sb06g029180 N 0.707
ppa005903m Prunus persica ppa005903m I 0.707
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.707
SB01G045570 Sorghum bicolor Sb01g045570 I 0.707
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.702
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.702
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.702
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.702
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.702
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.702