cassava31766.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava31766.valid.m1 T49305_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava31766.valid.m1 RRM 41 111
cassava31766.valid.m1 RRM 129 198
cassava31766.valid.m1 RRM 220 289
cassava31766.valid.m1 RRM 324 393

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.000
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.000
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.000
PK02172.1 Cannabis sativa PK02172.1 N 0.000
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.701
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.000
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.726
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.712
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.000
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.712
MDP0000253709 Malus x domestica MDP0000253709 N 0.000
MDP0000283985 Malus x domestica MDP0000283985 N 0.000
MDP0000497543 Malus x domestica MDP0000497543 N 0.000
MDP0000156895 Malus x domestica MDP0000156895 N 0.000
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.715
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.000
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.715
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.000
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.705
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.705
mgf009542m Mimulus guttatus mgf009542m N 0.705
mgf004973m Mimulus guttatus mgf004973m N 0.000
mgf005294m Mimulus guttatus mgf005294m N 0.000
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.715
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.708
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.722
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.705
ppa002618m Prunus persica ppa002618m N 0.000
ppa002607m Prunus persica ppa002607m N 0.701
ppa002620m Prunus persica ppa002620m N 0.000
30170.m013847 Ricinus communis 30170.m013847 N 0.708
29801.m003152 Ricinus communis 29801.m003152 N 0.712
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.705
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.000