Cucsa.219740 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.219740 T49593_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.219740.1 RRM 31 101
Cucsa.219740.1 RRM 119 188
Cucsa.219740.1 RRM 210 279
Cucsa.219740.1 RRM 313 382
Cucsa.219740.2 RRM 31 101
Cucsa.219740.2 RRM 119 188
Cucsa.219740.2 RRM 210 279
Cucsa.219740.2 RRM 313 382
Cucsa.219740.3 RRM 31 101
Cucsa.219740.3 RRM 119 188
Cucsa.219740.3 RRM 210 279
Cucsa.219740.3 RRM 313 382
Cucsa.219740.4 RRM 31 101
Cucsa.219740.4 RRM 119 188
Cucsa.219740.4 RRM 210 279
Cucsa.219740.4 RRM 313 382

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.865
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.861
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.861
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.858
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.858
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.851
ppa002607m Prunus persica ppa002607m N 0.851
29801.m003152 Ricinus communis 29801.m003152 N 0.847
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.843
MDP0000156895 Malus x domestica MDP0000156895 N 0.843
MDP0000253709 Malus x domestica MDP0000253709 N 0.843
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.840
MDP0000497543 Malus x domestica MDP0000497543 N 0.840
PK02172.1 Cannabis sativa PK02172.1 N 0.833
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.833
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.829
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.822
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.819
30170.m013847 Ricinus communis 30170.m013847 N 0.819
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.819
ppa002618m Prunus persica ppa002618m N 0.804
ppa002620m Prunus persica ppa002620m N 0.804
mgf009542m Mimulus guttatus mgf009542m N 0.801
mgf004973m Mimulus guttatus mgf004973m N 0.797
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.790
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.786
MDP0000283985 Malus x domestica MDP0000283985 N 0.786
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.783
PK00659.1 Cannabis sativa PK00659.1 N 0.779
mgf005294m Mimulus guttatus mgf005294m N 0.776
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.765
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.765
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.765
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.762
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.762
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.762
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.752
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.752
mgf004596m Mimulus guttatus mgf004596m N 0.751
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.751
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.747
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.747
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.744
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.740
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.737
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.737
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.733
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.730
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.726
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.726
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.726
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.722
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.722
SB06G021850 Sorghum bicolor Sb06g021850 N 0.719
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.716
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.712
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.712
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.701