XM_002869128.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Al_scaffold_0007_654 T32614_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0007_654 RRM 38 108
Al_scaffold_0007_654 RRM 126 195
Al_scaffold_0007_654 RRM 217 286
Al_scaffold_0007_654 RRM 320 389

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.968
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.890
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.819
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.811
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.797
29801.m003152 Ricinus communis 29801.m003152 N 0.794
MDP0000253709 Malus x domestica MDP0000253709 N 0.786
MDP0000156895 Malus x domestica MDP0000156895 N 0.786
30170.m013847 Ricinus communis 30170.m013847 N 0.783
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.783
ppa002607m Prunus persica ppa002607m N 0.783
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.783
MDP0000497543 Malus x domestica MDP0000497543 N 0.779
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.779
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.776
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.772
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.772
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.769
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.769
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.765
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.762
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.762
PK02172.1 Cannabis sativa PK02172.1 N 0.762
mgf004973m Mimulus guttatus mgf004973m N 0.758
mgf009542m Mimulus guttatus mgf009542m N 0.758
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.758
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.751
ppa002620m Prunus persica ppa002620m N 0.747
ppa002618m Prunus persica ppa002618m N 0.747
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.747
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.745
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.745
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.744
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.744
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.740
mgf005294m Mimulus guttatus mgf005294m N 0.740
PK00659.1 Cannabis sativa PK00659.1 N 0.730
MDP0000283985 Malus x domestica MDP0000283985 N 0.719
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.719
mgf004596m Mimulus guttatus mgf004596m N 0.719
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.715
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.708
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.708
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.708
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.706
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.705
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.705
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.705
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.701