PAB2 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT4G34110-TAIR-G T32791_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT4G34110.1-P RRM 38 108
AT4G34110.1-P RRM 126 195
AT4G34110.1-P RRM 217 286
AT4G34110.1-P RRM 320 389

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.968
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.872
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.804
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.797
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.786
29801.m003152 Ricinus communis 29801.m003152 N 0.779
30170.m013847 Ricinus communis 30170.m013847 N 0.772
MDP0000156895 Malus x domestica MDP0000156895 N 0.772
MDP0000253709 Malus x domestica MDP0000253709 N 0.772
ppa002607m Prunus persica ppa002607m N 0.769
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.769
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.769
MDP0000497543 Malus x domestica MDP0000497543 N 0.765
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.765
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.765
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.762
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.758
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.754
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.754
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.751
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.751
mgf009542m Mimulus guttatus mgf009542m N 0.747
mgf004973m Mimulus guttatus mgf004973m N 0.747
PK02172.1 Cannabis sativa PK02172.1 N 0.747
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.744
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.744
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.740
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.737
ppa002618m Prunus persica ppa002618m N 0.737
ppa002620m Prunus persica ppa002620m N 0.737
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.733
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.733
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.730
mgf005294m Mimulus guttatus mgf005294m N 0.726
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.723
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.723
PK00659.1 Cannabis sativa PK00659.1 N 0.719
MDP0000283985 Malus x domestica MDP0000283985 N 0.715
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.708
mgf004596m Mimulus guttatus mgf004596m N 0.705
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.701