e_gw.312.28.1 (Nematostella vectensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw.312.28.1 T50181_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.312.28.1 RRM 9 79

Links

Other RRM family RBPs
Other Nematostella vectensis RBPs

137 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s2502g11t1 Acyrtosiphon pisum DGIL_AUG5s2502g11t1 N 0.887
DGIL_AUG5s12011g4t1 Acyrtosiphon pisum DGIL_AUG5s12011g4t1 N 0.873
AAEL013869 Aedes aegypti AAEL013869 N 0.873
Ame_R018612 Ailuropoda melanoleuca Ame_R018612 N 0.873
Ame_R018329 Ailuropoda melanoleuca Ame_R018329 N 0.859
ENSACAG00000004388 Anolis carolinensis ENSACAG00000004388 N 0.887
AGAP004414 Anopheles gambiae AGAP004414 N 0.803
AGAP010918 Anopheles gambiae AGAP010918 N 0.859
amel4_ncbi_hmm3649 Apis mellifera amel4_ncbi_hmm3649 N 0.887
XM_002887343.1 Arabidopsis lyrata Al_scaffold_0002_1857 N 0.817
CSTF64 Arabidopsis thaliana AT1G71800-TAIR-G N 0.817
BGIBMGA006476 Bombyx mori BGIBMGA006476 N 0.887
CSTF2_BOVIN Bos taurus ENSBTAG00000003547 N 0.887
BRADI4G24180 Brachypodium distachyon BRADI4G24180 N 0.803
e_gw.65.105.1 Branchiostoma floridae e_gw.65.105.1 N 0.930
e_gw.65.110.1 Branchiostoma floridae e_gw.65.110.1 N 0.930
Bm1_06205 Brugia malayi Bm1_06205 N 0.732
CSTF2T Callithrix jacchus ENSCJAG00000005033 N 0.873
CSTF2 Callithrix jacchus ENSCJAG00000004422 N 0.887
CSTF2T Canis familiaris ENSCAFG00000015567 N 0.873
CSTF2 Canis familiaris ENSCAFG00000017551 N 0.887
PK22244.1 Cannabis sativa PK22244.1 N 0.831
estExt_Genewise1.C_550102 Capitella teleta estExt_Genewise1.C_550102 N 0.831
ENSCPOG00000004195 Cavia porcellus ENSCPOG00000004195 N 0.873
CSTF2 Cavia porcellus ENSCPOG00000015255 N 0.887
CSTF2 Choloepus hoffmanni ENSCHOG00000012803 N 0.845
CSTF2T Choloepus hoffmanni ENSCHOG00000011888 N 0.873
ENSCING00000017649 Ciona intestinalis ENSCING00000017649 N 0.831
ENSCSAVG00000010770 Ciona savignyi ENSCSAVG00000010770 N 0.831
Cucsa.364140 Cucumis sativus Cucsa.364140 N 0.831
CpipJ_CPIJ012662 Culex pipiens CpipJ_CPIJ012662 N 0.887
CPIJ012662 Culex quinquefasciatus CPIJ012662 N 0.887
cstf2 Danio rerio ENSDARG00000044009 N 0.873
PASA_GEN_0100181 Daphnia pulex PASA_GEN_0100181 N 0.789
GF16912 Drosophila ananassae FBgn0093932 N 0.859
GG22991 Drosophila erecta FBgn0115148 N 0.859
GH18352 Drosophila grimshawi FBgn0125820 N 0.859
CstF-64 Drosophila melanogaster FBgn0027841 N 0.859
GI23336 Drosophila mojavensis FBgn0146063 N 0.859
GL24357 Drosophila persimilis FBgn0161947 N 0.859
GA20525-RA Drosophila pseudoobscura FBgn0080519 N 0.859
GM17877 Drosophila sechellia FBgn0172784 N 0.859
GD19237 Drosophila simulans FBgn0190742 N 0.859
GJ10336 Drosophila virilis FBgn0197622 N 0.859
GK14167 Drosophila willistoni FBgn0216173 N 0.859
GE25546 Drosophila yakuba FBgn0242611 N 0.859
CSTF2 Echinops telfairi ENSETEG00000004931 N 0.859
CSTF2 Equus caballus ENSECAG00000009325 N 0.845
CSTF2 Felis catus ENSFCAG00000007000 N 0.887
CSTF2T Felis catus ENSFCAG00000013011 N 0.873
Q5ZLS0_CHICK Gallus gallus ENSGALG00000006760 N 0.887
CSTF2 Gasterosteus aculeatus ENSGACG00000017326 N 0.873
Glyma10g36350.1 Glycine max Glyma10g36350.1 N 0.831
Glyma20g31220.1 Glycine max Glyma20g31220.1 N 0.831
ENSGGOG00000026139 Gorilla gorilla ENSGGOG00000026139 N 0.873
CSTF2 Gorilla gorilla ENSGGOG00000022267 N 0.887
ENSGGOG00000022117 Gorilla gorilla ENSGGOG00000022117 N 0.873
112541 Helobdella robusta 112541 N 0.789
CSTF2T Homo sapiens ENSG00000177613 N 0.873
CSTF2 Homo sapiens ENSG00000101811 N 0.887
XP_002159315.1 Hydra magnipapillata XP_002159315.1 N 0.817
ISCW015573 Ixodes scapularis ISCW015573 N 0.887
LOAG_12614 Loa loa LOAG_12614 N 0.732
LjSGA_018671.1 Lotus japonicus LjSGA_018671.1 N 0.831
CSTF2 Loxodonta africana ENSLAFG00000000474 N 0.887
CSTF2T Loxodonta africana ENSLAFG00000002058 N 0.873
CSTF2T Macaca mulatta ENSMMUG00000010845 N 0.873
CSTF2 Macaca mulatta ENSMMUG00000013008 N 0.887
ENSMEUG00000011186 Macropus eugenii ENSMEUG00000011186 N 0.887
ENSMEUG00000007875 Macropus eugenii ENSMEUG00000007875 N 0.887
MDP0000208337 Malus x domestica MDP0000208337 N 0.803
MDP0000283046 Malus x domestica MDP0000283046 N 0.831
MDP0000142436 Malus x domestica MDP0000142436 N 0.831
CSTF2 Microcebus murinus ENSMICG00000014121 N 0.887
mgf002767m Mimulus guttatus mgf002767m N 0.817
mgf012202m Mimulus guttatus mgf012202m N 0.817
ENSMODG00000011785 Monodelphis domestica ENSMODG00000011785 N 0.887
e_gw1.7.481.1 Mucor circinelloides e_gw1.7.481.1 N 0.732
Cstf2t Mus musculus ENSMUSG00000053536 N 0.873
Cstf2 Mus musculus ENSMUSG00000031256 N 0.887
CSTF2 Myotis lucifugus ENSMLUG00000004598 N 0.887
CSTF2T Myotis lucifugus ENSMLUG00000011187 N 0.873
nasonia_NCBI_hmm235054 Nasonia vitripennis nasonia_NCBI_hmm235054 N 0.887
SNAPOd2T00016915001 Oikopleura dioica SNAPOd2T00016915001 N 0.789
ENSOANG00000004208 Ornithorhynchus anatinus ENSOANG00000004208 N 0.859
CSTF2 Oryctolagus cuniculus ENSOCUG00000010468 N 0.887
CSTF2T Oryctolagus cuniculus ENSOCUG00000004647 N 0.831
BGIOSIBCE033690 Oryza indica BGIOSIBCE033690 N 0.775
LOC_Os11g07490 Oryza sativa LOC_Os11g07490 N 0.803
CSTF2 Oryzias latipes ENSORLG00000001380 N 0.873
CSTF2 Pan troglodytes ENSPTRG00000022090 N 0.887
CSTF2T Pan troglodytes ENSPTRG00000002510 N 0.873
PHUM441150 Pediculus humanus PHUM441150 N 0.775
estExt_fgeneshPB_pg.C_20804 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_20804 N 0.704
gw1.36.17.1 Physcomitrella patens gw1.36.17.1 N 0.746
estExt_fgenesh1_pm.C_80118 Phytophthora capsici estExt_fgenesh1_pm.C_80118 N 0.789
PITG_14249 Phytophthora infestans PITG_14249 N 0.789
fgenesh1_pg.C_scaffold_74000038 Phytophthora ramorum fgenesh1_pg.C_scaffold_74000038 N 0.789
s_451557 Phytophthora sojae s_451557 N 0.789
EFA81339.1 Polysphondylium pallidum EFA81339.1 N 0.704
ENSPPYG00000020541 Pongo pygmaeus ENSPPYG00000020541 N 0.887
ENSPPYG00000002441 Pongo pygmaeus ENSPPYG00000002441 N 0.873
estExt_Genewise1.C_230050 Postia placenta estExt_Genewise1.C_230050 N 0.718
CSTF2T Procavia capensis ENSPCAG00000000046 N 0.873
ppa004010m Prunus persica ppa004010m N 0.831
CSTF2T Pteropus vampyrus ENSPVAG00000006274 N 0.873
D3ZKA4_RAT Rattus norvegicus ENSRNOG00000022436 N 0.873
RO3G_14170 Rhizopus oryzae RO3G_14170 N 0.761
28644.m000926 Ricinus communis 28644.m000926 N 0.817
SPRG_10503 Saprolegnia parasitica SPRG_10503 N 0.789
gw1.20.80.1 Selaginella moellendorfii gw1.20.80.1 N 0.775
CSTF2T Sorex araneus ENSSARG00000002013 N 0.873
SB05G004860 Sorghum bicolor Sb05g004860 N 0.803
CSTF2T Spermophilus tridecemlineatus ENSSTOG00000005624 N 0.873
SPPG_01899 Spizellomyces punctatus SPPG_01899 N 0.732
XP_001186020.1 Strongylocentrotus purpuratus XP_001186020.1 N 0.845
XP_001181887.1 Strongylocentrotus purpuratus XP_001181887.1 N 0.845
ENSSSCG00000010430 Sus scrofa ENSSSCG00000010430 N 0.873
ENSSSCG00000009884 Sus scrofa ENSSSCG00000009884 N 0.873
CSTF2 Sus scrofa ENSSSCG00000012486 N 0.887
CSTF2 Taeniopygia guttata ENSTGUG00000002253 N 0.887
CSTF2 Takifugu rubripes ENSTRUG00000004323 N 0.873
CSTF2 Tetraodon nigroviridis ENSTNIG00000016860 N 0.873
fgeneshTA2_pg.C_scaffold_5000618 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_5000618 N 0.817
GSTUMT00004863001 Tuber melanosporum GSTUMT00004863001 N 0.718
CSTF2 Tupaia belangeri ENSTBEG00000010029 N 0.845
CSTF2T Tursiops truncatus ENSTTRG00000003341 N 0.873
CSTF2 Tursiops truncatus ENSTTRG00000013556 N 0.887
UM02881 Ustilago maydis UM02881 N 0.704
CSTF2 Vicugna pacos ENSVPAG00000006466 N 0.845
GSVIVG00013670001 Vitis vinifera GSVIVG00013670001 N 0.817
WUBG_08006 Wuchereria bancrofti WUBG_08006 N 0.732
AAH80037 Xenopus laevis AAH80037 N 0.887
AAB50269 Xenopus laevis AAB50269 N 0.887
AAH41291 Xenopus laevis AAH41291 N 0.887
cstf2 Xenopus tropicalis ENSXETG00000009642 N 0.887
GRMZM2G174919 Zea mays GRMZM2G174919 N 0.803