MDP0000276227 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000276227 T57553_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000276227 RRM 137 207
MDP0000276227 RRM 230 301
MDP0000276227 RRM 349 413

Links

Other RRM family RBPs
Other Malus x domestica RBPs

26 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002871835.1 Arabidopsis lyrata fgenesh2_kg.6__1954__AT5G19350.2 N 0.774
AT5G19350 Arabidopsis thaliana AT5G19350-TAIR-G N 0.774
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.779
PK28027.1 Cannabis sativa PK28027.1 I 0.885
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.899
Glyma12g06120.1 Glycine max Glyma12g06120.1 N 0.784
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.803
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.837
MDP0000123414 Malus x domestica MDP0000123414 N 0.885
MDP0000123012 Malus x domestica MDP0000123012 N 0.861
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.865
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.841
mgf023806m Mimulus guttatus mgf023806m I 0.803
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.769
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.760
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.764
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.764
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.832
ppa005940m Prunus persica ppa005940m I 0.918
30169.m006434 Ricinus communis 30169.m006434 I 0.856
fgenesh2_pg.C_scaffold_39000056 Selaginella moellendorfii fgenesh2_pg.C_scaffold_39000056 I 0.740
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.750
SB01G045570 Sorghum bicolor Sb01g045570 I 0.808
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.716
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.875
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.803