LOC_Os12g21700 (Oryza sativa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 LOC_Os12g21700 T03974_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os12g21700.1 CCCH ZF 68 93
LOC_Os12g21700.1 CCCH ZF 113 138
LOC_Os12g21700.1 CCCH ZF 158 184
LOC_Os12g21700.1 CCCH ZF 319 345
LOC_Os12g21700.1 CCCH ZF 365 391

Links

Other CCCH ZF family RBPs
Other Oryza sativa RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.992
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.977
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.955
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.947
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.932
SB05G013190 Sorghum bicolor Sb05g013190 N 0.932
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.910
ppa005813m Prunus persica ppa005813m N 0.903
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.903
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.896
30128.m009030 Ricinus communis 30128.m009030 N 0.896
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.896
PK23881.1 Cannabis sativa PK23881.1 N 0.888
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.881
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.881
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.873
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.867
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.867
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.866
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.866
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.858
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.851
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.844
mgf007299m Mimulus guttatus mgf007299m N 0.837
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.836
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.836
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.835
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.828
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.827
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.813
MDP0000178517 Malus x domestica MDP0000178517 N 0.812
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.791
MDP0000665604 Malus x domestica MDP0000665604 N 0.754
MDP0000577111 Malus x domestica MDP0000577111 N 0.754
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.741
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.724
29726.m004014 Ricinus communis 29726.m004014 N 0.716
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.709
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.709
29620.m000559 Ricinus communis 29620.m000559 N 0.701
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.701
MDP0000285251 Malus x domestica MDP0000285251 N 0.701
cassava11170.m1 Manihot esculenta cassava11170.m1 N 0.701