PCBP4 (Gasterosteus aculeatus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSGACG00000002664 T18822_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.772
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.746
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.746
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.741
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.741
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000003487 KH 17 77
ENSGACP00000003487 KH 101 164
ENSGACP00000003487 KH 267 329
ENSGACP00000003489 KH 22 82
ENSGACP00000003489 KH 106 169
ENSGACP00000003489 KH 248 310

Links

Other KH family RBPs
Other Gasterosteus aculeatus RBPs

105 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.989
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.979
PCBP4 Oryzias latipes ENSORLG00000003061 I 0.814
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.804
PCBP4 Taeniopygia guttata ENSTGUG00000006393 I 0.788
PCBP4 Ornithorhynchus anatinus ENSOANG00000014110 I 0.788
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.778
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.778
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.778
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.778
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.778
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.778
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.778
PCBP4 Homo sapiens ENSG00000090097 I 0.778
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.778
LOC100060660 Equus caballus ENSECAG00000024218 I 0.778
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.778
PCBP4 Gorilla gorilla ENSGGOG00000012474 I 0.778
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.778
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.772
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.772
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.772
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.772
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.772
PCBP3 Gallus gallus ENSGALG00000013155 I 0.772
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.772
PCBP4 Cavia porcellus ENSCPOG00000014617 I 0.772
LOC100050101 Equus caballus ENSECAG00000012413 I 0.772
PCBP3 Homo sapiens ENSG00000183570 I 0.772
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.772
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.772
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.772
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.772
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.772
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.772
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.767
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.767
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.767
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.767
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.767
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.762
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.762
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.746
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.746
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.746
CAD29864 Xenopus laevis CAD29864 I 0.746
AAH84195 Xenopus laevis AAH84195 I 0.746
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.746
AAH41241 Xenopus laevis AAH41241 I 0.746
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.746
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.746
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.746
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.746
PCBP2 Equus caballus ENSECAG00000022389 I 0.746
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.746
PCBP2 Homo sapiens ENSG00000197111 D 0.746
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.746
pcbp2 Danio rerio ENSDARG00000013184 D 0.746
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.746
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.746
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.746
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.746
CAB50743 Xenopus laevis CAB50743 I 0.746
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.746
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.746
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.746
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.746
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.746
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.746
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.746
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.742
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.741
PCBP3 Gallus gallus ENSGALG00000004394 I 0.741
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.741
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.741
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.741
LOC100050579 Equus caballus ENSECAG00000002544 I 0.741
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.741
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.741
PCBP1 Homo sapiens ENSG00000169564 D 0.741
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.741
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.741
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.741
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.741
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.741
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.741
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.741
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.741
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.741
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.735
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.735
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.735
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.735
PCBP4 Monodelphis domestica ENSMODG00000011790 I 0.735
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.730
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.730
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.730
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.725
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.725
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.724
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.714
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.704
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.702
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.702