XM_002871611.1 (Arabidopsis lyrata)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 fgenesh2_kg.6__1509__AT5G15270.1 T20075_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__1509__AT5G15270.1 KH 45 104
fgenesh2_kg.6__1509__AT5G15270.1 KH 142 209
fgenesh2_kg.6__1509__AT5G15270.1 KH 282 336
fgenesh2_kg.6__1509__AT5G15270.1 KH 367 434

Links

Other KH family RBPs
Other Arabidopsis lyrata RBPs

22 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT5G15270 Arabidopsis thaliana AT5G15270-TAIR-G N 0.984
Cucsa.158200 Cucumis sativus Cucsa.158200 N 0.790
cassava42742.valid.m1 Manihot esculenta cassava42742.valid.m1 N 0.778
cassava42741.valid.m1 Manihot esculenta cassava42741.valid.m1 N 0.778
cassava42739.valid.m1 Manihot esculenta cassava42739.valid.m1 N 0.778
cassava42740.valid.m1 Manihot esculenta cassava42740.valid.m1 N 0.778
ppa003758m Prunus persica ppa003758m N 0.766
Glyma18g49600.1 Glycine max Glyma18g49600.1 N 0.762
A9PE42_POPTR Populus trichocarpa POPTR_0017s12170 N 0.762
Glyma09g37070.1 Glycine max Glyma09g37070.1 N 0.755
Medtr7g010360 Medicago truncatula Medtr7g010360 N 0.750
MDP0000573228 Malus x domestica MDP0000573228 N 0.750
PK16782.1 Cannabis sativa PK16782.1 N 0.750
Medtr6g013130 Medicago truncatula Medtr6g013130 N 0.747
Glyma19g02840.1 Glycine max Glyma19g02840.1 N 0.744
chr1.CM0141.280.nc Lotus japonicus chr1.CM0141.280.nc N 0.743
B9H0D1_POPTR Populus trichocarpa POPTR_0004s12220 N 0.742
GSVIVG00011439001 Vitis vinifera GSVIVG00011439001 N 0.735
LjSGA_002278.2 Lotus japonicus LjSGA_002278.2 N 0.724
mgf011898m Mimulus guttatus mgf011898m N 0.715
mgf007265m Mimulus guttatus mgf007265m N 0.715
Glyma13g05520.1 Glycine max Glyma13g05520.1 N 0.705