LjSGA_002278.2 (Lotus japonicus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 LjSGA_002278.2 T21777_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_002278.2 KH 90 150
LjSGA_002278.2 KH 186 253
LjSGA_002278.2 KH 329 384
LjSGA_002278.2 KH 415 482

Links

Other KH family RBPs
Other Lotus japonicus RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma19g02840.1 Glycine max Glyma19g02840.1 N 0.882
chr1.CM0141.280.nc Lotus japonicus chr1.CM0141.280.nc N 0.878
Medtr6g013130 Medicago truncatula Medtr6g013130 N 0.854
Glyma13g05520.1 Glycine max Glyma13g05520.1 N 0.846
Glyma09g37070.1 Glycine max Glyma09g37070.1 N 0.831
Glyma18g49600.1 Glycine max Glyma18g49600.1 N 0.831
GSVIVG00011439001 Vitis vinifera GSVIVG00011439001 N 0.820
PK16782.1 Cannabis sativa PK16782.1 N 0.810
Cucsa.158200 Cucumis sativus Cucsa.158200 N 0.807
Medtr7g010360 Medicago truncatula Medtr7g010360 N 0.807
ppa003758m Prunus persica ppa003758m N 0.807
cassava42742.valid.m1 Manihot esculenta cassava42742.valid.m1 N 0.803
cassava42741.valid.m1 Manihot esculenta cassava42741.valid.m1 N 0.803
cassava42740.valid.m1 Manihot esculenta cassava42740.valid.m1 N 0.803
cassava42739.valid.m1 Manihot esculenta cassava42739.valid.m1 N 0.803
MDP0000573228 Malus x domestica MDP0000573228 N 0.802
A9PE42_POPTR Populus trichocarpa POPTR_0017s12170 N 0.787
B9H0D1_POPTR Populus trichocarpa POPTR_0004s12220 N 0.780
mgf011898m Mimulus guttatus mgf011898m N 0.760
mgf007265m Mimulus guttatus mgf007265m N 0.760
GSVIVG00019958001 Vitis vinifera GSVIVG00019958001 N 0.753
XM_002871611.1 Arabidopsis lyrata fgenesh2_kg.6__1509__AT5G15270.1 N 0.724
AT5G15270 Arabidopsis thaliana AT5G15270-TAIR-G N 0.720
BRADI1G61230 Brachypodium distachyon BRADI1G61230 N 0.720
29813.m001513 Ricinus communis 29813.m001513 N 0.706