CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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IGF2BP3
(
Microcebus murinus
)
KH,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00076 (RRM_1)
IPR018111
IPR000504
ENSMICG00000013683
T22231_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
IGF2BP3
M295_0.6
Homo sapiens
Sequence logo not available
CAUU
PAR-clip
Cook et al.(2011)
357_20371350
0.975
IGF2BP3
M163_0.6
Homo sapiens
AMAHWCA
RNAcompete
Ray et al.(2013)
RNCMPT00172
0.975
IGF2BP1
M296_0.6
Homo sapiens
AAGCACCCGUU
SELEX
Cook et al.(2011)
359_12507992
0.790
IGF2BP1
M293_0.6
Homo sapiens
Sequence logo not available
CAU
PAR-clip
Cook et al.(2011)
355_20371350
0.790
IGF2BP2
M294_0.6
Homo sapiens
Sequence logo not available
CAU
PAR-clip
Cook et al.(2011)
356_20371350
0.727
IGF2BP2
M032_0.6
Homo sapiens
VMAHWCA
RNAcompete
Ray et al.(2013)
RNCMPT00033
0.727
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMICP00000012488
RRM
4
69
LYIGNLSENAAPSDLESIFKDAKIPVSGPFLVKTGYAFVDCPDESWALKAIEALSGKMELHGKPIE
ENSMICP00000012488
RRM
83
150
LQIRNIPPHLQWEVLDGLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLK
ENSMICP00000012488
KH
197
260
PLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSAACKSI
ENSMICP00000012488
KH
278
343
PLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKAEEEI
ENSMICP00000012488
KH
407
470
TVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQFKAQGRI
ENSMICP00000012488
KH
489
554
EAHIRVPSFAAGRVIGKGGKTAKVNELQNLSSAEVVVPRDQTPDENDQVVVKITGHFYACQAIVAQ
Links
Other
KH,RRM
family RBPs
Other
Microcebus murinus
RBPs
66 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
IGF2BP3
Macaca mulatta
ENSMMUG00000004839
I
0.985
IGF2BP3
Callithrix jacchus
ENSCJAG00000001499
I
0.975
IGF2BP3
Homo sapiens
ENSG00000136231
D
0.975
XR_022832.1
Pan troglodytes
ENSPTRG00000018986
I
0.975
IGF2BP3
Tursiops truncatus
ENSTTRG00000008921
I
0.965
Igf2bp3
Dipodomys ordii
ENSDORG00000014185
I
0.965
D3ZB84_RAT
Rattus norvegicus
ENSRNOG00000009052
I
0.954
Igf2bp3
Mus musculus
ENSMUSG00000029814
I
0.949
IGF2BP3
Ornithorhynchus anatinus
ENSOANG00000014203
I
0.898
IF2B3_CHICK
Gallus gallus
ENSGALG00000010961
I
0.884
IGF2BP3
Taeniopygia guttata
ENSTGUG00000002773
I
0.884
ENSPPYG00000017730
Pongo pygmaeus
ENSPPYG00000017730
I
0.873
IGF2BP3
Anolis carolinensis
ENSACAG00000013538
I
0.871
AAC18597
Xenopus laevis
AAC18597
I
0.863
AAH57700
Xenopus laevis
AAH57700
I
0.863
igf2bp3
Xenopus tropicalis
ENSXETG00000007396
I
0.863
AAB97457
Xenopus laevis
AAB97457
I
0.863
O57526
Xenopus laevis
O57526
I
0.863
IGF2BP3
Choloepus hoffmanni
ENSCHOG00000002341
I
0.858
AAI70477
Xenopus laevis
AAI70477
I
0.856
O73932
Xenopus laevis
O73932
I
0.856
AAI70479
Xenopus laevis
AAI70479
I
0.856
AAI70224
Xenopus laevis
AAI70224
I
0.856
AAI70196
Xenopus laevis
AAI70196
I
0.856
AAC41285
Xenopus laevis
AAC41285
I
0.856
AAC18598
Xenopus laevis
AAC18598
I
0.856
IGF2BP3
Monodelphis domestica
ENSMODG00000001014
I
0.841
igf2bp3
Danio rerio
ENSDARG00000010266
I
0.825
IGF2BP1
Anolis carolinensis
ENSACAG00000006199
I
0.813
IGF2BP3
Oryzias latipes
ENSORLG00000004712
I
0.808
IF2B1_CHICK
Gallus gallus
ENSGALG00000001293
I
0.805
igf2bp1
Danio rerio
ENSDARG00000061478
I
0.795
IGF2BP1
Microcebus murinus
ENSMICG00000013324
I
0.792
IGF2BP1
Monodelphis domestica
ENSMODG00000012268
I
0.792
IGF2BP1
Pan troglodytes
ENSPTRG00000009368
I
0.792
LOC100395821
Callithrix jacchus
ENSCJAG00000007258
I
0.790
IGF2BP1
Bos taurus
ENSBTAG00000011736
I
0.790
Ame_R004727
Ailuropoda melanoleuca
Ame_R004727
I
0.790
IGF2BP3
Tetraodon nigroviridis
ENSTNIG00000017755
I
0.790
IGF2BP1
Loxodonta africana
ENSLAFG00000002048
I
0.790
IGF2BP1
Homo sapiens
ENSG00000159217
D
0.790
IGF2BP1
Equus caballus
ENSECAG00000009723
I
0.790
ENSPPYG00000008913
Pongo pygmaeus
ENSPPYG00000008913
I
0.790
Igf2bp1
Mus musculus
ENSMUSG00000013415
I
0.787
IGF2BP3
Takifugu rubripes
ENSTRUG00000006094
I
0.787
Igf2bp1
Rattus norvegicus
ENSRNOG00000006122
I
0.787
IGF2BP1
Gasterosteus aculeatus
ENSGACG00000005318
I
0.785
IGF2BP1
Canis familiaris
ENSCAFG00000016907
I
0.785
IGF2BP1
Macaca mulatta
ENSMMUG00000011533
I
0.785
IGF2BP1
Oryctolagus cuniculus
ENSOCUG00000004411
I
0.782
IGF2BP1
Gorilla gorilla
ENSGGOG00000008872
I
0.775
IGF2BP1
Tursiops truncatus
ENSTTRG00000007197
I
0.768
IGF2BP1
Tetraodon nigroviridis
ENSTNIG00000013986
I
0.767
IGF2BP1
Otolemur garnettii
ENSOGAG00000001270
I
0.756
IGF2BP1
Cavia porcellus
ENSCPOG00000020174
I
0.747
igf2bp2a
Danio rerio
ENSDARG00000003421
I
0.732
IGF2BP2
Macaca mulatta
ENSMMUG00000023416
I
0.727
IGF2BP2
Oryctolagus cuniculus
ENSOCUG00000005057
I
0.727
IGF2BP2
Homo sapiens
ENSG00000073792
D
0.727
XR_025001.1
Pan troglodytes
ENSPTRG00000015705
I
0.727
Igf2bp2
Rattus norvegicus
ENSRNOG00000025946
I
0.725
Igf2bp2
Mus musculus
ENSMUSG00000033581
I
0.722
IGF2BP2
Gasterosteus aculeatus
ENSGACG00000005991
I
0.715
LOC424865
Gallus gallus
ENSGALG00000006523
I
0.712
Igf2bp1
Dipodomys ordii
ENSDORG00000014371
I
0.710
IGF2BP1
Pteropus vampyrus
ENSPVAG00000001718
I
0.703