LOC100395821 (Callithrix jacchus)
KH,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1)
PF00076 (RRM_1) 		IPR018111
IPR000504 		ENSCJAG00000007258 T22185_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
IGF2BP1
M296_0.6 		Homo sapiens AAGCACCCGUU SELEX
Cook et al.(2011)
359_12507992 		1.000
IGF2BP1
M293_0.6 		Homo sapiens Sequence logo not available CAU PAR-clip
Cook et al.(2011)
355_20371350 		1.000
IGF2BP3
M295_0.6 		Homo sapiens Sequence logo not available CAUU PAR-clip
Cook et al.(2011)
357_20371350 		0.809
IGF2BP3
M163_0.6 		Homo sapiens AMAHWCA RNAcompete
Ray et al.(2013)
RNCMPT00172 		0.809
IGF2BP2
M294_0.6 		Homo sapiens Sequence logo not available CAU PAR-clip
Cook et al.(2011)
356_20371350 		0.749
IGF2BP2
M032_0.6 		Homo sapiens VMAHWCA RNAcompete
Ray et al.(2013)
RNCMPT00033 		0.749
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000013579 RRM 4 69
ENSCJAP00000013579 RRM 83 143
ENSCJAP00000013579 KH 139 204
ENSCJAP00000013579 KH 268 331
ENSCJAP00000013579 KH 350 414
ENSCJAP00000013583 RRM 4 69
ENSCJAP00000013583 RRM 83 150
ENSCJAP00000013583 KH 197 260
ENSCJAP00000013583 KH 278 343
ENSCJAP00000013583 KH 407 470
ENSCJAP00000013583 KH 489 553

Links

Other KH,RRM family RBPs
Other Callithrix jacchus RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
IGF2BP1 Homo sapiens ENSG00000159217 D 1.000
IGF2BP1 Loxodonta africana ENSLAFG00000002048 I 1.000
Ame_R004727 Ailuropoda melanoleuca Ame_R004727 I 1.000
IGF2BP1 Equus caballus ENSECAG00000009723 I 1.000
ENSPPYG00000008913 Pongo pygmaeus ENSPPYG00000008913 I 1.000
IGF2BP1 Microcebus murinus ENSMICG00000013324 I 0.997
IGF2BP1 Bos taurus ENSBTAG00000011736 I 0.997
Igf2bp1 Mus musculus ENSMUSG00000013415 I 0.997
Igf2bp1 Rattus norvegicus ENSRNOG00000006122 I 0.997
IGF2BP1 Pan troglodytes ENSPTRG00000009368 I 0.997
IGF2BP1 Canis familiaris ENSCAFG00000016907 I 0.995
IGF2BP1 Macaca mulatta ENSMMUG00000011533 I 0.995
IGF2BP1 Monodelphis domestica ENSMODG00000012268 I 0.987
IGF2BP1 Oryctolagus cuniculus ENSOCUG00000004411 I 0.982
IGF2BP1 Gorilla gorilla ENSGGOG00000008872 I 0.975
IGF2BP1 Tursiops truncatus ENSTTRG00000007197 I 0.967
IGF2BP1 Anolis carolinensis ENSACAG00000006199 I 0.959
IF2B1_CHICK Gallus gallus ENSGALG00000001293 I 0.954
IGF2BP1 Otolemur garnettii ENSOGAG00000001270 I 0.929
IGF2BP1 Cavia porcellus ENSCPOG00000020174 I 0.919
Igf2bp1 Dipodomys ordii ENSDORG00000014371 I 0.888
IGF2BP1 Felis catus ENSFCAG00000002454 N 0.870
IGF2BP1 Pteropus vampyrus ENSPVAG00000001718 I 0.865
igf2bp1 Danio rerio ENSDARG00000061478 I 0.863
IGF2BP1 Gasterosteus aculeatus ENSGACG00000005318 I 0.858
AAI70196 Xenopus laevis AAI70196 I 0.837
AAI70479 Xenopus laevis AAI70479 I 0.837
AAC41285 Xenopus laevis AAC41285 I 0.837
AAC18598 Xenopus laevis AAC18598 I 0.837
AAI70224 Xenopus laevis AAI70224 I 0.837
O73932 Xenopus laevis O73932 I 0.837
AAI70477 Xenopus laevis AAI70477 I 0.837
IGF2BP3 Anolis carolinensis ENSACAG00000013538 I 0.835
igf2bp3 Xenopus tropicalis ENSXETG00000007396 I 0.835
AAC18597 Xenopus laevis AAC18597 I 0.832
IGF2BP3 Taeniopygia guttata ENSTGUG00000002773 I 0.832
O57526 Xenopus laevis O57526 I 0.832
IF2B3_CHICK Gallus gallus ENSGALG00000010961 I 0.832
AAH57700 Xenopus laevis AAH57700 I 0.832
AAB97457 Xenopus laevis AAB97457 I 0.832
IGF2BP1 Tetraodon nigroviridis ENSTNIG00000013986 I 0.830
IGF2BP1 Spermophilus tridecemlineatus ENSSTOG00000010643 N 0.823
IGF2BP3 Tursiops truncatus ENSTTRG00000008921 I 0.814
IGF2BP3 Ornithorhynchus anatinus ENSOANG00000014203 I 0.810
IGF2BP3 Monodelphis domestica ENSMODG00000001014 I 0.810
IGF2BP3 Homo sapiens ENSG00000136231 D 0.809
IGF2BP3 Callithrix jacchus ENSCJAG00000001499 I 0.809
XR_022832.1 Pan troglodytes ENSPTRG00000018986 I 0.809
IGF2BP3 Macaca mulatta ENSMMUG00000004839 I 0.807
D3ZB84_RAT Rattus norvegicus ENSRNOG00000009052 I 0.807
Igf2bp3 Dipodomys ordii ENSDORG00000014185 I 0.807
Igf2bp3 Mus musculus ENSMUSG00000029814 I 0.804
IGF2BP1 Tarsius syrichta ENSTSYG00000003912 I 0.802
IGF2BP1 Procavia capensis ENSPCAG00000016601 N 0.790
IGF2BP3 Microcebus murinus ENSMICG00000013683 I 0.790
igf2bp3 Danio rerio ENSDARG00000010266 I 0.779
IGF2BP3 Oryzias latipes ENSORLG00000004712 I 0.779
igf2bp2a Danio rerio ENSDARG00000003421 I 0.774
IGF2BP3 Takifugu rubripes ENSTRUG00000006094 I 0.768
IGF2BP3 Tetraodon nigroviridis ENSTNIG00000017755 I 0.761
IGF2BP2 Oryctolagus cuniculus ENSOCUG00000005057 I 0.751
Igf2bp2 Rattus norvegicus ENSRNOG00000025946 I 0.751
XR_025001.1 Pan troglodytes ENSPTRG00000015705 I 0.749
IGF2BP2 Homo sapiens ENSG00000073792 D 0.749
Igf2bp2 Mus musculus ENSMUSG00000033581 I 0.749
IGF2BP2 Macaca mulatta ENSMMUG00000023416 I 0.749
IGF2BP2 Gasterosteus aculeatus ENSGACG00000005991 I 0.741
IGF2BP3 Choloepus hoffmanni ENSCHOG00000002341 I 0.740
ENSPPYG00000017730 Pongo pygmaeus ENSPPYG00000017730 I 0.733
LOC424865 Gallus gallus ENSGALG00000006523 I 0.728
IGF2BP2 Oryzias latipes ENSORLG00000016532 I 0.726
IGF2BP2 Takifugu rubripes ENSTRUG00000009908 I 0.718
IGF2BP2 Tetraodon nigroviridis ENSTNIG00000016472 I 0.716
IGF2BP1 Dasypus novemcinctus ENSDNOG00000006801 N 0.705